Pre commit hooks

.Rbuildignore

@@ -9,3 +9,4 @@
 ^main\.R$
 ^.*.quarto
 ^data-raw$
+^\.pre-commit-config\.yaml$

.pre-commit-config.yaml

@@ -0,0 +1,76 @@
+# All available hooks: https://pre-commit.com/hooks.html
+# R specific hooks: https://github.com/lorenzwalthert/precommit
+repos:
+-   repo: https://github.com/lorenzwalthert/precommit
+    rev: v0.3.2.9027
+    hooks: 
+    -   id: style-files
+        args: [--style_pkg=styler, --style_fun=tidyverse_style]    
+    -   id: roxygenize
+    # codemeta must be above use-tidy-description when both are used
+    # -   id: codemeta-description-updated
+    -   id: use-tidy-description
+    -   id: spell-check
+        exclude: >
+          (?x)^(
+          .*\.[rR]|
+          .*\.feather|
+          .*\.jpeg|
+          .*\.pdf|
+          .*\.png|
+          .*\.py|
+          .*\.RData|
+          .*\.rds|
+          .*\.Rds|
+          .*\.Rproj|
+          .*\.sh|
+          (.*/|)\.gitignore|
+          (.*/|)\.gitlab-ci\.yml|
+          (.*/|)\.lintr|
+          (.*/|)\.pre-commit-.*|
+          (.*/|)\.Rbuildignore|
+          (.*/|)\.Renviron|
+          (.*/|)\.Rprofile|
+          (.*/|)\.travis\.yml|
+          (.*/|)appveyor\.yml|
+          (.*/|)NAMESPACE|
+          (.*/|)renv/settings\.dcf|
+          (.*/|)renv\.lock|
+          (.*/|)WORDLIST|
+          \.github/workflows/.*|
+          data/.*|
+          )$
+    -   id: lintr
+    -   id: readme-rmd-rendered
+    -   id: parsable-R
+    -   id: no-browser-statement
+    -   id: no-print-statement
+    -   id: no-debug-statement
+    -   id: deps-in-desc
+    -   id: pkgdown
+-   repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v1.2.3
+    hooks: 
+    -   id: check-added-large-files
+        args: ['--maxkb=200']
+    -   id: file-contents-sorter
+        files: '^\.Rbuildignore$'
+    -   id: end-of-file-fixer
+        exclude: '\.Rd'
+-   repo: https://github.com/pre-commit-ci/pre-commit-ci-config
+    rev: v1.5.1
+    hooks:
+    # Only required when https://pre-commit.ci is used for config validation
+    -   id: check-pre-commit-ci-config
+-   repo: local
+    hooks:
+    -   id: forbid-to-commit
+        name: Don't commit common R artifacts
+        entry: Cannot commit .Rhistory, .RData, .Rds or .rds.
+        language: fail
+        files: '\.(Rhistory|RData|Rds|rds)$'
+        # `exclude: <regex>` to allow committing specific files
+
+ci:
+    autoupdate_schedule: monthly
+    skip: [pkgdown]

R/frequency-tables.R

@@ -1357,7 +1357,6 @@ calculate_multi_table_freqs <- function(data, col1, col2, levels1, levels2, prop
 }
 
 
-
 #' @title Convert frequencies to proportions
 #'
 #' @param data frequency table with three columns (can be of any name): name, value and count