working paper

benyamindsmith · Nov 22, 2024 · e79bc89 · e79bc89
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diff --git a/utils/joss_paper/images/algorithm_comparison_karate.png b/utils/joss_paper/images/algorithm_comparison_karate.png
diff --git a/utils/joss_paper/images/karate_network.png b/utils/joss_paper/images/karate_network.png
diff --git a/utils/joss_paper/paper.Rmd b/utils/joss_paper/paper.Rmd
@@ -1,5 +1,5 @@
 ---
-title: 'ig.degree.betweenness: A Community Detection Algorithm Leveraging Degree Centrality'
+title: 'ig.degree.betweenness: An R Package for Community Detection Using Degree Centrality and Betweenness'
 author: "Benjamin Smith"
 tags:
   - R
@@ -84,8 +84,11 @@ library(ig.degree.betweenness)
 # Attach the Karate Club dataset
 # Data from {igraphdata}
 data("karate")
+# Define layout- for visual purposes
+layout_plot <- layout_nicely(karate, dim = 2)
+
 # Plot the initial network (Figure 1)
-plot(karate)
+plot(karate,layout = layout_plot)
 # Girvan-Newman Clustering (Figure 2 (a))
 # Function from {igraph}
 gn_karate <- igraph::cluster_edge_betweenness(karate)
@@ -100,8 +103,6 @@ sp_karate <- ig.degree.betweenness::cluster_degree_betweenness(karate)
 
 # Plot 3 plots next to eachother
 par(mfrow= c(1,3),mar=c(0,0,0,0)+1)
-layout_plot <- layout_nicely(karate, dim = 2)
-
 plot(gn_karate, karate, main = "(a)", layout = layout_plot)
 
 plot(louvain_karate, karate, main = "(b)", layout = layout_plot)
@@ -221,7 +222,6 @@ ig.degree.betweenness::plot_simplified_edgeplot(
 
 # Licensing and Availability
 
-{ig.degree.betweenness} is licensed under a MIT lisence. It is available on CRAN, and can be installed using `install.packages("ig.degree.betweenness")`.  All code is open-source and hosted on 
-GitHub, and bugs can be reported at https://github.com/benyamindsmith/ig.degree.betweenness/issues/.
+{ig.degree.betweenness} is licensed under a MIT lisence. It is available on CRAN, and can be installed using `install.packages("ig.degree.betweenness")`.  All code is open-source and hosted on GitHub, and bugs can be reported at https://github.com/benyamindsmith/ig.degree.betweenness/issues/.
 
 # References
diff --git a/utils/joss_paper/paper.log b/utils/joss_paper/paper.log
@@ -1,4 +1,4 @@
-This is XeTeX, Version 3.141592653-2.6-0.999996 (TeX Live 2024) (preloaded format=xelatex 2024.11.4)  6 NOV 2024 21:34
+This is XeTeX, Version 3.141592653-2.6-0.999996 (TeX Live 2024) (preloaded format=xelatex 2024.11.4)  21 NOV 2024 19:08
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@@ -979,6 +979,11 @@ Package hyperref Warning: Suppressing link with empty target on input line 305.
 Package hyperref Warning: Suppressing link with empty target on input line 305.
 
 
+Underfull \hbox (badness 1237) in paragraph at lines 335--349
+[]\TU/lmr/m/n/10 {igraph} supports a range of popular community detection algorithms, including
+ []
+
+
 
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 (fancyhdr)                \addtolength{\topmargin}{-0.95425pt}.
 
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@@ -1076,7 +1073,7 @@ File: ./images/tt_1.png Graphic file (type bmp)
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 \TU/lmr/m/n/10 and can be installed using \TU/lmtt/m/n/10 install.packages("ig.degree.betweenness")\TU/lmr/m/n/10 . All
  []
 
@@ -1127,7 +1124,7 @@ Package logreq Info: Writing requests to 'paper.run.xml'.
 Here is how much of TeX's memory you used:
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