Version 15
Key Points
- Breaking: Katsu has switched to Phenopackets v2. All clinical/phenotypic metadata must be remapped to the new schema. We've also included a converter in
bentoctl
. - New service: reference service (for reference genomes and other reference material in the future)
- Now, non-human variants can be ingested via first ingesting a non-human reference genome
- A database password must be set in
local.env
:BENTO_REFERENCE_DB_PASSWORD=...
- Permissions must be configured for the reference service
- Several small improvements to the public portal, including translations and chart presentation
Service Updates
- Authorization 0.4.0 -> 0.6.0
- Beacon 0.11.0 -> 0.12.1
- DRS 0.13.0 -> 0.15.1
- Event relay 3.0.2 -> 3.1.0
- Gateway 0.7.1 -> 0.8.1
- Gohan 4.0.1 -> 5.0.0
- Katsu 5.0.0 -> 6.0.0
- Notification 3.0.1 -> 3.1.0
- Public 0.16.2 -> 0.17.0
- Service registry 1.2.2 -> 1.3.2
- Web 3.2.2 -> 4.0.0
- WES 0.11.0 -> 0.12.6
- New service: Reference service 0.1.1
What's Changed
- [15] Allow public to contact Gohan via container URL by @noctillion in #189
- Elasticsearch GUI client by @v-rocheleau in #201
- [15] Implement new authorization service / evaluation / WES by @davidlougheed in #202
- [15] feat: Phenopacket V2 by @v-rocheleau in #190
- [15] chore: update various service tags + fix a small bug in bentoctl by @davidlougheed in #205
- feat: local package dev by @v-rocheleau in #206
- [15] beacon version by @gsfk in #207
- [15] add reference service by @davidlougheed in #204
- docs: split README into multiple guides by @davidlougheed in #208
- chore: set up a volume to hold DRS tempfiles for ingest by @davidlougheed in #209
- Release v15 by @davidlougheed in #196
- chore(deps): bump cryptography from 41.0.4 to 41.0.6 by @dependabot in #203
Full Changelog: v14...v15