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Version 15

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@davidlougheed davidlougheed released this 10 Jan 18:43
· 481 commits to main since this release
a6acc5d

Key Points

  • Breaking: Katsu has switched to Phenopackets v2. All clinical/phenotypic metadata must be remapped to the new schema. We've also included a converter in bentoctl.
  • New service: reference service (for reference genomes and other reference material in the future)
    • Now, non-human variants can be ingested via first ingesting a non-human reference genome
    • A database password must be set in local.env: BENTO_REFERENCE_DB_PASSWORD=...
    • Permissions must be configured for the reference service
  • Several small improvements to the public portal, including translations and chart presentation

Service Updates

  • Authorization 0.4.0 -> 0.6.0
  • Beacon 0.11.0 -> 0.12.1
  • DRS 0.13.0 -> 0.15.1
  • Event relay 3.0.2 -> 3.1.0
  • Gateway 0.7.1 -> 0.8.1
  • Gohan 4.0.1 -> 5.0.0
  • Katsu 5.0.0 -> 6.0.0
  • Notification 3.0.1 -> 3.1.0
  • Public 0.16.2 -> 0.17.0
  • Service registry 1.2.2 -> 1.3.2
  • Web 3.2.2 -> 4.0.0
  • WES 0.11.0 -> 0.12.6
  • New service: Reference service 0.1.1

What's Changed

Full Changelog: v14...v15