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feat: Add automated QC filtering #161

Merged
merged 12 commits into from
Sep 10, 2023
Merged

feat: Add automated QC filtering #161

merged 12 commits into from
Sep 10, 2023

Commits on Sep 4, 2023

  1. refactor: Make assemblyqc (quast) run by default

    @jvfe
    jvfe committed Sep 4, 2023
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  2. test: Fix test samplesheet and trace

    @jvfe
    jvfe committed Sep 4, 2023
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  3. feat: Add QC param section

    @jvfe
    jvfe committed Sep 4, 2023
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  4. test: Add quast report to recombination

    @jvfe
    jvfe committed Sep 4, 2023
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  5. refactor: Run regex on all recombination inputs

    @jvfe
    jvfe committed Sep 4, 2023
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  6. feat: Add filtering based on N50 

    - Static initially
    @jvfe
    jvfe committed Sep 4, 2023
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Commits on Sep 5, 2023

  1. refactor: Improve warning

    @jvfe
    jvfe committed Sep 5, 2023
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  2. fix: Add color reset

    @jvfe
    jvfe committed Sep 5, 2023
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Commits on Sep 6, 2023

  1. feat: Add subset warning (#162)

    @jvfe
    jvfe committed Sep 6, 2023
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Commits on Sep 8, 2023

  1. feat: Add QC filtering params

    @jvfe
    jvfe committed Sep 8, 2023
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  2. chore: Update schema

    @jvfe
    jvfe committed Sep 8, 2023
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  3. docs: Update params documentation

    @jvfe
    jvfe committed Sep 8, 2023
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