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feat: Add resource profiles #151

Merged
merged 12 commits into from
Aug 22, 2023
Merged

feat: Add resource profiles #151

merged 12 commits into from
Aug 22, 2023

Commits on Jul 20, 2023

  1. refactor: Change some module resource labels 

    Based on previous testing
    @jvfe
    jvfe committed Jul 20, 2023
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  2. feat: Add resource profiles and change base reqs 

    - Also makes recombination run by default
    @jvfe
    jvfe committed Jul 20, 2023
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Commits on Jul 21, 2023

  1. refactor: Change panaroo run to high

    @jvfe
    jvfe committed Jul 21, 2023
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  2. refactor: Increase time for high

    @jvfe
    jvfe committed Jul 21, 2023
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Commits on Jul 23, 2023

  1. docs: Add basic resource profiles documentation

    @jvfe
    jvfe committed Jul 23, 2023
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Commits on Jul 24, 2023

  1. Merge branch 'master' into profile-reqs 

    * master:
  docs: Add mkdocs for building documentation (#153)
  docs: Add params documentation (#152)
    @jvfe
    jvfe committed Jul 24, 2023
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Commits on Aug 21, 2023

  1. refactor: Increase reqs for some modules 

    - Decided after Entirococcus testing
    @jvfe
    jvfe committed Aug 21, 2023
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  2. Merge branch 'master' into profile-reqs 

    * master: (27 commits)
  feat: Add EvolCCM (#158)
  Update README.md (#157)
  docs: Add microreact faq
  refactor: Reduce number of ann tools in test_full
  feat: Add test_full dataset (#156)
  refactor: Collect assemblies for quast input (#155)
  Update README.md
  Update README.md
  Update README.md
  Update README.md
  Update README.md
  docs: Add SLURM debugging tip
  docs: Update citations
  docs: Add round of general documentation improvements (#154)
  docs: Fix typos and add faq.md
  Update README.md
  Update README.md
  Update README.md
  Update README.md
  Update README.md
  ...
    @jvfe
    jvfe committed Aug 21, 2023
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  3. docs: Update resource requirement documentation

    @jvfe
    jvfe committed Aug 21, 2023
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  4. refactor: Run all ann tools in large config

    @jvfe
    jvfe committed Aug 21, 2023
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Commits on Aug 22, 2023

  1. docs: Bolden sentence

    @jvfe
    jvfe committed Aug 22, 2023
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  2. fix: Change descriptions for profiles

    @jvfe
    jvfe committed Aug 22, 2023
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