feat: Allow defining extra arguments for evolCCM

beiko-lab · Jun 12, 2024 · 6b77f97 · 6b77f97
1 parent 7499eed
commit 6b77f97
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/modules/local/evolccm.nf b/modules/local/evolccm.nf
@@ -22,14 +22,16 @@ process EVOLCCM {
     task.ext.when == null || task.ext.when
 
     script:
+    def args = task.ext.args ?: ''
     """
     ParallelEvolCCM.R \\
         --intree \\
         $core_tree \\
         --intable \\
         $feature_table \\
         --cores \\
-        $task.cpus
+        $task.cpus \\
+        $args
     """
 
     stub: