Add rSPR #943
Workflow file for this run
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name: nf-test CI | |
# This workflow runs the nf-test test suite | |
on: | |
pull_request: | |
release: | |
types: [published] | |
env: | |
NXF_ANSI_LOG: false | |
jobs: | |
test: | |
name: Run ${{ matrix.profile }} pipeline test | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
NXF_VER: | |
- "latest-stable" | |
profile: ["docker"] # TODO , "singularity", "conda"] | |
steps: | |
- name: Check out pipeline code | |
uses: actions/checkout@v2 | |
- uses: actions/cache@v2 | |
with: | |
path: /usr/local/bin/nextflow | |
key: ${{ runner.os }} | |
restore-keys: | | |
${{ runner.os }}-nextflow- | |
- name: Install Nextflow | |
uses: nf-core/setup-nextflow@v1 | |
with: | |
version: "${{ matrix.NXF_VER }}" | |
- name: Install nf-test | |
run: | | |
wget -qO- https://code.askimed.com/install/nf-test | bash | |
sudo mv nf-test /usr/local/bin/ | |
- name: Run nf-test | |
run: nf-test test --profile=${{ matrix.profile }} tests/**/**/*nf.test --tap=test.tap | |
- uses: pcolby/tap-summary@v1 | |
with: | |
path: >- | |
test.tap |