release: version 🚀

HISTORY.md

@@ -1,213 +0,0 @@
-Changelog
-=========
-
-
-(unreleased)
-------------
-- Formatcode for linting. [Christophe Bécavin]
-- Fix many dependencies. [Christophe Bécavin]
-- Release: version 0.3.3 🚀 [Christophe Bécavin]
-- Fix str2bool import. [Christophe Bécavin]
-- Release: version 0.3.2 🚀 [Christophe Bécavin]
-- Release: version 0.3.1 🚀 [Christophe Bécavin]
-- Fix dependencies for bioconda. [Christophe Bécavin]
-- Release: version 0.3.0 🚀 [Christophe Bécavin]
-- Add default hyperparameters. [Christophe Bécavin]
-- Move run.py and run_hp.py to experiment_script.obsolete. [Christophe
-  Bécavin]
-- Clean again project. [Christophe Bécavin]
-- Move analysis_notebooks, bash_script, celltype -->> to
-  experiment_script/obsolete/ [Christophe Bécavin]
-- Merge branch 'AntoineCollin:main' into main. [Christophe Becavin]
-- Merge pull request #16 from becavin-lab/main. [Christophe Becavin]
-
-  release: version 0.1.20 🚀
-- Clean project. [Christophe Bécavin]
-- Remove workflow_jobs. [Christophe Bécavin]
-- Remove runfiles.yaml. [Christophe Bécavin]
-- Remove obsolete. [Christophe Bécavin]
-- Fix import errors for : import scmusketeers. [Christophe Bécavin]
-- Add init files. [Christophe Bécavin]
-- Release: version 0.2.1 🚀 [Christophe Bécavin]
-- Release: version 0.2.00 🚀 [Christophe Bécavin]
-- Remove pytorch in dependecy. [Christophe Bécavin]
-- Release: version 0.1.24 🚀 [Christophe Bécavin]
-- Release: version 0.1.23 🚀 [Christophe Bécavin]
-- Release: version 0.1.22 🚀 [Christophe Bécavin]
-- Release: version 0.1.21 🚀 [Christophe Bécavin]
-- Modify mkdocs. [Christophe Bécavin]
-- Release: version 0.1.20 🚀 [Christophe Bécavin]
-- Release: version 0.1.13 🚀 [Christophe Bécavin]
-- Release: version 0.1.12 🚀 [Christophe Bécavin]
-- Release: version 0.1.12 🚀 [Christophe Bécavin]
-- Format code. [Christophe Bécavin]
-- Release: version 0.1.11 🚀 [Christophe Bécavin]
-- Format code. [Christophe Bécavin]
-- Release: version 0.1.10 🚀 [Christophe Bécavin]
-- Release: version 0.1.9 🚀 [Christophe Bécavin]
-- Format code. [Christophe Bécavin]
-- Release: version 0.1.9 🚀 [Christophe Bécavin]
-- Format code. [Christophe Bécavin]
-- Small modif tutorial. [Christophe Bécavin]
-- Merge pull request #14 from AntoineCollin/bug_update. [Christophe
-  Becavin]
-
-  Bug update
-- Merge from benchmark and bug_update. [Christophe Bécavin]
-- Createmain_temp branch. [Christophe Bécavin]
-- Fixed bug and task 4. [AntoineCollin]
-- Huge debug in permutation.py. [AntoineCollin]
-- Update README.md. [Christophe Becavin]
-- Update README.md. [Christophe Becavin]
-- Update README.md. [Christophe Becavin]
-- Update README.md. [Christophe Becavin]
-- Fix main. [Christophe Bécavin]
-- Update tutorail, add Deprez et al. Lung dataset. [Christophe Bécavin]
-- Change tutorial.sh. [Christophe Bécavin]
-- Create batch_step function (in last commit) [Christophe Bécavin]
-- Modify attributes of workflow, add ae dann and class_param, add
-  freeze.py, clean attributes list in workflow. [Christophe Bécavin]
-- Fix the use of neptune_log parameter to disable Neptune.AI.
-  [Christophe Bécavin]
-- Modify epoch parameters. [Christophe Bécavin]
-- Release: version 0.1.7 🚀 [Christophe Bécavin]
-- Release: version 0.1.6 🚀 [Christophe Bécavin]
-- Release: version 0.1.5 🚀 [Christophe Bécavin]
-- Continuous integration 🔄 tests-0.1.5. [Christophe Bécavin]
-- Merge branch 'main' of github.com:AntoineCollin/scMusketeers merged.
-  [Christophe Bécavin]
-- Update README.md. [Christophe Becavin]
-- Continuous integration 🔄 tests-0.1.4. [Christophe Bécavin]
-- Merge pull request #12 from AntoineCollin/renaming. [Christophe
-  Becavin]
-
-  Merge Renaming to Main
-- Update tutorial with CellTypist Lung. [Christophe Bécavin]
-- Update tutorial with CellTypist Lung. [Christophe Bécavin]
-- Merge branch 'renaming' of github.com:AntoineCollin/scMusketeers into
-  renaming merge. [Christophe Bécavin]
-- Update README.md. [Christophe Becavin]
-- Update README.md. [Christophe Becavin]
-- Update tutorial with CellTypist Lung. [Christophe Bécavin]
-- Modifiy tutorial to work on CellTypist Lung atlas. [Christophe
-  Bécavin]
-- Add jupyter tutorial. [Christophe Bécavin]
-- Test modif git. [Christophe Bécavin]
-- Release: version 0.1.4 🚀 [Christophe Bécavin]
-- Release: version 0.1.3 🚀 [Christophe Bécavin]
-- Release: version 0.1.2 🚀 [Christophe Bécavin]
-- Merge branch 'renaming' of github.com:AntoineCollin/scMusketeers into
-  renaming. [Christophe Bécavin]
-- Update README.md. [Christophe Becavin]
-- Update poetry dependencies. [Christophe Bécavin]
-- Format code and linting. [Christophe Bécavin]
-- Fix security alert - dependabot. [Christophe Bécavin]
-- Rename package name : scmusketeers. [Christophe Bécavin]
-- Merge pull request #10 from AntoineCollin/main. [Christophe Becavin]
-
-  Rename executable andd parameters
-- Merge pull request #9 from AntoineCollin/benchmark. [Christophe
-  Becavin]
-
-  Rename executable andd parameters
-- Rename executable andd parameters. [Christophe Bécavin]
-- Merge pull request #8 from AntoineCollin/benchmark. [Christophe
-  Becavin]
-
-  Merge Benchmark into Main
-- Merge branch 'main' into benchmark. [Christophe Becavin]
-- Update README.md. [AntoineCollin]
-- Update README.md. [Christophe Becavin]
-- Fix poetry, format code. [Christophe Bécavin]
-- Update poetry after renaming to scMusketeers. [Christophe Bécavin]
-- Modify mkdocs for Musketeers. [Christophe Bécavin]
-- Modify make file. [Christophe Bécavin]
-- First tutorial done! [Christophe Bécavin]
-- First tutorial working for cell transfer on one dataset. [Christophe
-  Bécavin]
-- Fix tutorial bugs and create jupyter notebook. [Christophe Bécavin]
-- Fix model for publi in optimize_model.py. [Christophe Bécavin]
-- Fix some bug. [Christophe Bécavin]
-- Create tutorial jupyter notebook. [Christophe Bécavin]
-- Update doc. [Christophe Bécavin]
-- Update project name. [Christophe Bécavin]
-- Fix sampling of dataset. [Christophe Bécavin]
-- Add tutoriel.py to create tutorial data, and update tutorial.sh with
-  use-cases. [Christophe Bécavin]
-- Add tutoriel.py to create tutorial data, and update tutorial.sh with
-  use-cases. [Christophe Bécavin]
-- Add tutoriel.py to create tutorial data, and update tutorial.sh with
-  use-cases. [Christophe Bécavin]
-- Correction coquille. [AntoineCollin]
-- Modify tutoriel for Chris. [Christophe Bécavin]
-- Test test tutorial. [Christophe Bécavin]
-- Debugging. [AntoineCollin]
-- Prepare tutorial. [Christophe Bécavin]
-- Modify code for first tutorial scpermut transfer. [Christophe Bécavin]
-- Add tutorial for transfer. [Christophe Bécavin]
-- Modified transfer for command line usage. [AntoineCollin]
-- Create Main. [Christophe Bécavin]
-- Add README and update poetry. [Christophe Bécavin]
-- Add folders from memoryleak. [Christophe Bécavin]
-- Merging with Christophe. [AntoineCollin]
-- Added several training scheme and expe. [AntoineCollin]
-- Safety commit before adding pseudo labeling. [AntoineCollin]
-- Added run & run_hp as well as few experiments scripts. [AntoineCollin]
-- Add poetry. [Christophe Bécavin]
-- Modif benchmark python files in benchmark folder. [Christophe Bécavin]
-- Modif benchmark python files in benchmark folder. [Christophe Bécavin]
-- Modif hp_script. [Christophe Bécavin]
-- Merge pull request #3 from AntoineCollin/package. [Christophe Becavin]
-
-  P.R. Package to Main
-- Modif exemple_sbatch_hp_script.sh. [Christophe Bécavin]
-- Move workflow main to __main__ [Christophe Bécavin]
-- Rename benchmark - pas a jour ? [Christophe Bécavin]
-- Fix import. [Christophe Bécavin]
-- Clean clean. [Christophe Bécavin]
-- Move to obsolete worklow. [Christophe Bécavin]
-- DCA to obsolete. [Christophe Bécavin]
-- Clean some files. [Christophe Bécavin]
-- Bash script for hp working ! [Christophe Bécavin]
-- Prepare test bash script - exemple_bego_script.sh. [Christophe
-  Bécavin]
-- Move all python files. [Christophe Bécavin]
-- Move files and create folder. [Christophe Bécavin]
-- Test. [Christophe Bécavin]
-- ScPermut repo migration. [AntoineCollin]
-- Minor leak workflow_hp & operational benchmark. [AntoineCollin]
-- Added benchmark models. [AntoineCollin]
-- Hyperparam from json. [AntoineCollin]
-- Last modifs. [Simon Pelletier]
-- Separate job debugging. [AntoineCollin]
-- Adding fixes for tf data leaks. [AntoineCollin]
-- Fixed tensorflow data leaks. [AntoineCollin]
-- Gitignore issue fixed. [AntoineCollin]
-- Gitignore issue fixed. [AntoineCollin]
-- Gitignore issue fixed. [AntoineCollin]
-- Adding experiment files. [AntoineCollin]
-- Ready to launch ! [AntoineCollin]
-- Ready to launch ! [AntoineCollin]
-- Ready to launch ! [AntoineCollin]
-- Adding hparams optim. [spell00]
-- Added early stopping in training loop. [AntoineCollin]
-- Added command line launch script. [AntoineCollin]
-- Added command line launch script. [AntoineCollin]
-- Added command line launch script. [AntoineCollin]
-- Added training loop and training scheme, started cleaning
-  workfflow_hp. [AntoineCollin]
-- Added training loop and training scheme, started cleaning
-  workfflow_hp. [AntoineCollin]
-- First commit on new branch. [AntoineCollin]
-- Starting subclassing, last version before branching. [AntoineCollin]
-- Late commit. [AntoineCollin]
-- Added batch_removal_AE, metrics computation, fixed few bugs.
-  [AntoineCollin]
-- Changed computation of metrics to be performed once. Corrected
-  randomness of permutation.py. Corrected semi_sup in dataset.py.
-  Corrected contrastive loss. [AntoineCollin]
-- Removed useless files. [AntoineCollin]
-- Removed useless files. [AntoineCollin]
-- Removed useless files. [AntoineCollin]
-
-

scmusketeers/tools/VERSION

@@ -1 +1 @@
-0.3.4
+