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add freqB table
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Keoni Gandall committed Dec 6, 2023
1 parent 6ef1c98 commit c72d6b1
Showing 1 changed file with 379 additions and 0 deletions.
379 changes: 379 additions & 0 deletions synthesis/codon/default_tables/freqB.json
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{
"start_codons": [
"TTG",
"CTG",
"ATT",
"ATC",
"ATA",
"ATG",
"GTG"
],
"stop_codons": [
"TAA",
"TAG",
"TGA"
],
"amino_acids": [
{
"letter": "Y",
"codons": [
{
"triplet": "TAT",
"weight": 42
},
{
"triplet": "TAC",
"weight": 58
}
]
},
{
"letter": "C",
"codons": [
{
"triplet": "TGT",
"weight": 42
},
{
"triplet": "TGC",
"weight": 58
}
]
},
{
"letter": "I",
"codons": [
{
"triplet": "ATT",
"weight": 49
},
{
"triplet": "ATC",
"weight": 51
},
{
"triplet": "ATA",
"weight": 0
}
]
},
{
"letter": "V",
"codons": [
{
"triplet": "GTT",
"weight": 35
},
{
"triplet": "GTC",
"weight": 28
},
{
"triplet": "GTA",
"weight": 3
},
{
"triplet": "GTG",
"weight": 34
}
]
},
{
"letter": "G",
"codons": [
{
"triplet": "GGT",
"weight": 60
},
{
"triplet": "GGC",
"weight": 39
},
{
"triplet": "GGA",
"weight": 0
},
{
"triplet": "GGG",
"weight": 0
}
]
},
{
"letter": "L",
"codons": [
{
"triplet": "TTA",
"weight": 3
},
{
"triplet": "TTG",
"weight": 14
},
{
"triplet": "CTT",
"weight": 2
},
{
"triplet": "CTC",
"weight": 3
},
{
"triplet": "CTA",
"weight": 0
},
{
"triplet": "CTG",
"weight": 78
}
]
},
{
"letter": "W",
"codons": [
{
"triplet": "TGG",
"weight": 1
}
]
},
{
"letter": "K",
"codons": [
{
"triplet": "AAA",
"weight": 51
},
{
"triplet": "AAG",
"weight": 49
}
]
},
{
"letter": "S",
"codons": [
{
"triplet": "TCT",
"weight": 10
},
{
"triplet": "TCC",
"weight": 13
},
{
"triplet": "TCA",
"weight": 2
},
{
"triplet": "TCG",
"weight": 5
},
{
"triplet": "AGT",
"weight": 0
},
{
"triplet": "AGC",
"weight": 68
}
]
},
{
"letter": "*",
"codons": [
{
"triplet": "TAA",
"weight": 2015
},
{
"triplet": "TAG",
"weight": 1667
},
{
"triplet": "TGA",
"weight": 1300
}
]
},
{
"letter": "Q",
"codons": [
{
"triplet": "CAA",
"weight": 45
},
{
"triplet": "CAG",
"weight": 55
}
]
},
{
"letter": "R",
"codons": [
{
"triplet": "CGT",
"weight": 62
},
{
"triplet": "CGC",
"weight": 35
},
{
"triplet": "CGA",
"weight": 0
},
{
"triplet": "CGG",
"weight": 0
},
{
"triplet": "AGA",
"weight": 3
},
{
"triplet": "AGG",
"weight": 0
}
]
},
{
"letter": "A",
"codons": [
{
"triplet": "GCT",
"weight": 12
},
{
"triplet": "GCC",
"weight": 19
},
{
"triplet": "GCA",
"weight": 24
},
{
"triplet": "GCG",
"weight": 44
}
]
},
{
"letter": "E",
"codons": [
{
"triplet": "GAA",
"weight": 43
},
{
"triplet": "GAG",
"weight": 57
}
]
},
{
"letter": "F",
"codons": [
{
"triplet": "TTT",
"weight": 45
},
{
"triplet": "TTC",
"weight": 55
}
]
},
{
"letter": "P",
"codons": [
{
"triplet": "CCT",
"weight": 9
},
{
"triplet": "CCC",
"weight": 0
},
{
"triplet": "CCA",
"weight": 10
},
{
"triplet": "CCG",
"weight": 81
}
]
},
{
"letter": "H",
"codons": [
{
"triplet": "CAT",
"weight": 38
},
{
"triplet": "CAC",
"weight": 62
}
]
},
{
"letter": "M",
"codons": [
{
"triplet": "ATG",
"weight": 1
}
]
},
{
"letter": "T",
"codons": [
{
"triplet": "ACT",
"weight": 10
},
{
"triplet": "ACC",
"weight": 57
},
{
"triplet": "ACA",
"weight": 0
},
{
"triplet": "ACG",
"weight": 33
}
]
},
{
"letter": "N",
"codons": [
{
"triplet": "AAT",
"weight": 47
},
{
"triplet": "AAC",
"weight": 53
}
]
},
{
"letter": "D",
"codons": [
{
"triplet": "GAT",
"weight": 46
},
{
"triplet": "GAC",
"weight": 54
}
]
}
]
}

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