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pipeline_status
Boris Clénet edited this page Nov 14, 2023
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The status column tells whether the work on the pipeline is :
🔴 not started yet
🟠 in progress
🟢 completed
The main software column gives a simplified version of what can be found in the team descriptions under the general.software column.
The reproducibility column rates the pipeline as follows:
- default score is ⭐⭐⭐⭐;
- -1:star: if the team did not use fmriprep data;
- -1:star: if the team used several pieces of software (e.g.: FSL and AFNI);
- -1:star: if the team used custom or marginal software (i.e.: something else than SPM, FSL, AFNI or nistats);
- -1:star: if the team did not provided his source code.
| team_id | status | main software | fmriprep used ? | related issues | related pull requests | excluded from NARPS analysis | reproducibility |
|---|---|---|---|---|---|---|---|
| Q6O0 | 🟢 | SPM | Yes | No | ⭐⭐⭐▪️ |
||
| 6VV2 | 🟠 | AFNI | No | 126, 36, | 37, | No | ⭐⭐▪️▪️ |
| 08MQ | 🟠 | FSL | No | 120, | 121, | No | ⭐⭐▪️▪️ |
| 1KB2 | 🟠 | FSL | No | 61, 53, 3, | 62, | No | ⭐⭐▪️▪️ |
| 43FJ | 🟠 | FSL | No | 71, 53, 3, | 94, | No | ⭐⭐▪️▪️ |
| 4SZ2 | 🟠 | FSL | Yes | 96, | 99, | Yes | ⭐⭐⭐▪️ |
| 4TQ6 | 🟠 | FSL | Yes | 53, 3, | Yes | ⭐⭐⭐▪️ |
|
| B5I6 | 🟠 | FSL | Yes | 95, | 102, | No | ⭐⭐⭐▪️ |
| O6R6 | 🟠 | FSL | Yes | 97, | No | ⭐⭐⭐▪️ |
|
| T54A | 🟠 | FSL | Yes | 76, 53, | 77, | No | ⭐⭐⭐▪️ |
| X19V | 🟠 | FSL | Yes | 53, | 93, | No | ⭐⭐⭐▪️ |
| 0ED6 | 🟠 | SPM | No | 51, | 55, | No | ⭐⭐▪️▪️ |
| 0I4U | 🟠 | SPM | No | 53, 3, | No | ⭐⭐▪️▪️ |
|
| 3C6G | 🟠 | SPM | No | 105, | 106, | No | ⭐⭐▪️▪️ |
| 98BT | 🟠 | SPM | No | 118, 53, | 119, | Yes | ⭐⭐▪️▪️ |
| UK24 | 🟠 | SPM | No | 60, | No | ⭐⭐▪️▪️ |
|
| V55J | 🟠 | SPM | No | 53, | Yes | ⭐⭐▪️▪️ |
|
| 2T6S | 🟠 | SPM | Yes | 107, 42, | No | ⭐⭐⭐▪️ |
|
| 9T8E | 🟠 | SPM | Yes | 49, | No | ⭐⭐⭐▪️ |
|
| C88N | 🟠 | SPM | Yes | 115, 53, | 116, | No | ⭐⭐⭐▪️ |
| J7F9 | 🟠 | SPM | Yes | 79, 53, | 80, | No | ⭐⭐⭐▪️ |
| R9K3 | 🟠 | SPM | Yes | 98, 53, | 78, | No | ⭐⭐⭐▪️ |
| U26C | 🟠 | SPM | Yes | 21, | No | ⭐⭐⭐⭐ Link to shared analysis code : https://github.com/gladomat/narps |
|
| VG39 | 🟠 | SPM | Yes | 57, | 59, | Yes | ⭐⭐⭐▪️ |
| 27SS | 🔴 | AFNI | No | No | ⭐⭐▪️▪️ |
||
| I9D6 | 🔴 | AFNI | No, we used AFNI's afni_proc.py tool (in conjunction with other AFNI software and FreeSurfer) to carry out the pre-processing and analysis (mostly) in the same analysis run for each subject. | No | ⭐⭐▪️▪️ |
||
| 80GC | 🔴 | AFNI | Yes | No | ⭐⭐⭐▪️ |
||
| K9P0 | 🔴 | AFNI | Yes | No | ⭐⭐⭐▪️ |
||
| O03M | 🔴 | AFNI | Yes | No | ⭐⭐⭐▪️ |
||
| UI76 | 🔴 | AFNI | Yes | No | ⭐⭐⭐▪️ |
||
| E6R3 | 🔴 | AFNI, other | Yes | No | ⭐⭐▪️▪️ |
||
| 3PQ2 | 🔴 | FSL | No | No | ⭐⭐▪️▪️ |
||
| 9Q6R | 🔴 | FSL | No | No | ⭐⭐▪️▪️ |
||
| C22U | 🔴 | FSL | No | No | ⭐▪️▪️▪️ Custom Matlab script for white matter PCA confounds |
||
| I52Y | 🔴 | FSL | No | No | ⭐⭐▪️▪️ |
||
| L9G5 | 🔴 | FSL | No | No | ⭐⭐▪️▪️ |
||
| P5F3 | 🔴 | FSL | No | Yes | ⭐⭐▪️▪️ |
||
| Q58J | 🔴 | FSL | No | Yes | ⭐⭐⭐▪️ Link to shared analysis code : https://github.com/amrka/NARPS_Q58J |
||
| XU70 | 🔴 | FSL | No | No | ⭐▪️▪️▪️ Uses custom software : FSL + 4drealign |
||
| 51PW | 🔴 | FSL | Yas | No | ⭐⭐⭐▪️ |
||
| 50GV | 🔴 | FSL | Yes | No | ⭐⭐⭐▪️ Uses custom software (Denoiser) |
||
| O21U | 🔴 | FSL | Yes | No | ⭐⭐⭐▪️ |
||
| B23O | 🔴 | FSL | Yes | No | ⭐⭐⭐▪️ |
||
| 0C7Q | 🔴 | FSL, AFNI | Yes | Yes | ⭐⭐▪️▪️ |
||
| I07H | 🔴 | FSL, AFNI | Yes | Yes | ⭐⭐▪️▪️ |
||
| R7D1 | 🔴 | FSL, AFNI | Yes | No | ⭐⭐⭐▪️ Link to shared analysis code : https://github.com/IMTAltiStudiLucca/NARPS_R7D1 |
||
| X1Y5 | 🔴 | FSL, AFNI | Yes | No | ⭐⭐▪️▪️ |
||
| X1Z4 | 🔴 | FSL, HCP Workbench | No | Yes | ⭐▪️▪️▪️ Multiple software dependencies : FSL + fmriprep + ciftify + HCP workbench + Freesurfer + ANTs |
||
| R42Q | 🔴 | FSL, SPM, AFNI, nistats | No | No | ⭐⭐▪️▪️ Uses fMRIflows, a custom software based on NiPype. Code available here : https://github.com/ilkayisik/narps_R42Q |
||
| AO86 | 🔴 | FSL, nistats | Yes | No | ⭐⭐▪️▪️ |
||
| 2T7P | 🔴 | Other | No | Yes | ⭐⭐▪️▪️ Link to shared analysis code : https://osf.io/3b57r |
||
| 0H5E | 🔴 | SPM | No | Yes | ⭐⭐▪️▪️ |
||
| 1P0Y | 🔴 | SPM | No | No | ⭐⭐▪️▪️ |
||
| 6FH5 | 🔴 | SPM | No | Yes | ⭐⭐▪️▪️ |
||
| 94GU | 🔴 | SPM | No | No | ⭐▪️▪️▪️ Multiple software dependencies : SPM + ART + TAPAS + Matlab. |
||
| L1A8 | 🔴 | SPM | No | Yes | ⭐⭐▪️▪️ |
||
| L3V8 | 🔴 | SPM | No | Yes | ⭐⭐▪️▪️ |
||
| R5K7 | 🔴 | SPM | No | No | ⭐⭐▪️▪️ |
||
| 3TR7 | 🔴 | SPM | Yes | No | ⭐⭐⭐▪️ |
||
| 5G9K | 🔴 | SPM | Yes | Yes | ⭐⭐⭐▪️ |
||
| DC61 | 🔴 | SPM | Yes | No | ⭐⭐⭐▪️ |
||
| E3B6 | 🔴 | SPM | Yes | Yes | ⭐⭐⭐⭐ Link to shared analysis code : doi.org/10.5281/zenodo.3518407 |
||
| L7J7 | 🔴 | SPM | Yes | No | ⭐⭐⭐▪️ |
||
| 46CD | 🔴 | SPM, AFNI | No | No | ⭐▪️▪️▪️ |
||
| IZ20 | 🔴 | SPM, AFNI | No | No | ⭐▪️▪️▪️ |
||
| 16IN | 🔴 | matlab; SPM; Microsoft R Open; TExPosition; neuroim | Yes | Yes | ⭐⭐▪️▪️ Multiple software dependencies : matlab + SPM + FSL + R + TExPosition + neuroim. Link to shared analysis code : https://github.com/jennyrieck/NARPS |
||
| 9U7M | 🔴 | nistats | No | No | ⭐⭐▪️▪️ |
||
| 0JO0 | 🔴 | nistats | Yes | No | ⭐⭐⭐▪️ |
||
| SM54 | 🔴 | nistats | Yes | No | ⭐⭐⭐▪️ |
||
| 1K0E | 🔴 | nistats, FSL, HCP Workbench | No, but we did use fmriprep 1.1.8 | Yes | ⭐▪️▪️▪️ |