Issue with Registration and Threshold

bclenet · Oct 17, 2023 · ecc4977 · ecc4977
1 parent 1ac7267
commit ecc4977
Showing 1 changed file with 4 additions and 1 deletion.
diff --git a/narps_open/pipelines/team_08MQ.py b/narps_open/pipelines/team_08MQ.py
@@ -82,14 +82,17 @@ def get_preprocessing(self):
         normalization_anat.inputs.fixed_image = Info.standard_image('MNI152_T1_2mm_brain.nii.gz')
         normalization_anat.inputs.transforms = ['Rigid', 'Affine', 'SyN']
         normalization_anat.inputs.metric = ['MI', 'MI', 'CC']
+        normalization_anat.inputs.metric_weight = [1.0 / 3.0, 1.0 / 3.0, 1.0 / 3.0]
+        normalization_anat.inputs.shrink_factors = [1, 1, 1]
+        normalization_anat.inputs.smoothing_sigmas = [0.0, 0.0, 0.0]
 
         # Threshold Node - create white-matter mask
         threshold_white_matter = Node(Threshold(), name = 'threshold_white_matter')
         threshold_white_matter.inputs.thresh = 1
 
         # Threshold Node - create CSF mask
         threshold_csf = Node(Threshold(), name = 'threshold_csf')
-        threshold_white_matter.inputs.thresh = 1
+        threshold_csf.inputs.thresh = 1
 
         # ErodeImage Node - Erode white-matter mask
         erode_white_matter = Node(ErodeImage(), name = 'erode_white_matter')