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@sshugsc sshugsc released this 22 Feb 23:12
· 58 commits to master since this release
v7.0.0
f8d1b6f
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Learn about vigilant mode.

Breaking Changes

  • [KBDEV-1158] - clinicaltrial loader now uses api upload instead of file
  • [KBDEV-1167] - cancergenomeinterpreter now uses biomarkers file instead of biomarker_per_variant
  • [KBDEV-1135] - ncit loader updated to use latest file
  • [KBDEV-1139] - ensembl loader updated to use latest file with proteins

New Features

  • all_source: New loader to upload all sources

BugFixes

  • Snakefile: Fix loading errors
  • [KBDEV-1050] - docm: Remap some statements to "recurrent" relevance term
  • [KBDEV-1086] - vocabulary ontology data: Link "copy variant" to "mutation" instead of "structural variant"
  • ncit: Use preferredName to handle the drugs with different id but the same name
  • moa: Handle empty string

Improvements

  • [KBDEV-957] - sources: Add ESMO, tso500 and Profile as source
  • [KBDEV-1120] - evidenceLevels ontology data: Add more Profile evidenceLevels
  • [KBDEV-1084] - vocabulary ontology data: Add "cancer gene"
  • Snakefile: Add all_local and all_ontologies
Assets 2
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