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Implement radiation therapy process in v3 #89

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increase radiation radius

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Implement radiation therapy process in v3 #89

increase radiation radius
1ae8f33
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GitHub Actions / checkstyle completed Nov 15, 2024 in 1s

reviewdog [checkstyle] report

reported by reviewdog 🐶

Findings (56)

test/arcade/potts/sim/Potts3DTest.java|1| File length is 2,371 lines (max allowed is 2,000).
test/arcade/potts/sim/Potts3DTest.java|211 col 18| ';' is followed by whitespace.
src/arcade/potts/sim/PottsSeries.java|215 col 15| Comment matches to-do format 'TODO:'.
src/arcade/potts/vis/PottsVisualization.java|174 col 5| Method create3DDrawers length is 277 lines (max allowed is 150).
src/arcade/potts/vis/PottsDrawer.java|41 col 9| Missing a Javadoc comment.
src/arcade/potts/vis/PottsDrawer.java|42 col 9| Missing a Javadoc comment.
src/arcade/potts/vis/PottsDrawer.java|43 col 9| Missing a Javadoc comment.
src/arcade/potts/vis/PottsDrawer.java|48 col 9| Missing a Javadoc comment.
src/arcade/potts/vis/PottsDrawer.java|49 col 9| Missing a Javadoc comment.
src/arcade/potts/vis/PottsDrawer.java|50 col 9| Missing a Javadoc comment.
src/arcade/potts/vis/PottsDrawer.java|51 col 9| Missing a Javadoc comment.
src/arcade/potts/vis/PottsDrawer.java|52 col 9| Missing a Javadoc comment.
src/arcade/potts/vis/PottsDrawer.java|53 col 9| Missing a Javadoc comment.
src/arcade/potts/vis/PottsDrawer.java|54 col 9| Missing a Javadoc comment.
src/arcade/core/gui/GUI.java|374 col 5| Class XMLFileFilter should be declared as final.
src/arcade/patch/agent/action/PatchActionRadiation.java|1| File does not end with a newline.
src/arcade/patch/agent/action/PatchActionRadiation.java|9 col 8| Unused import - arcade.core.env.location.Location.
src/arcade/patch/agent/action/PatchActionRadiation.java|28| First sentence should end with a period.
src/arcade/patch/agent/action/PatchActionRadiation.java|31| First sentence should end with a period.
src/arcade/patch/agent/action/PatchActionRadiation.java|34| First sentence should end with a period.
src/arcade/patch/agent/action/PatchActionRadiation.java|37| First sentence should end with a period.
src/arcade/patch/agent/action/PatchActionRadiation.java|40| First sentence should end with a period.
src/arcade/patch/agent/action/PatchActionRadiation.java|43 col 40| Expected @param tag for 'series'.
src/arcade/patch/agent/action/PatchActionRadiation.java|43 col 56| Expected @param tag for 'parameters'.
src/arcade/patch/agent/action/PatchActionRadiation.java|72| Line is longer than 100 characters (found 119).
src/arcade/patch/agent/action/PatchActionRadiation.java|122 col 5| Comment has incorrect indentation level 4, expected is 8, indentation should be the same level as line 75.
src/arcade/patch/agent/cell/PatchCell.java|343 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/cell/PatchCell.java|469 col 19| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/cell/PatchCell.java|476 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/cell/PatchCellCancerStem.java|46 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/module/PatchModuleProliferation.java|81 col 23| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/module/PatchModuleProliferation.java|114 col 23| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/module/PatchModuleMigration.java|60 col 23| Comment matches to-do format 'TODO:'.
src/arcade/patch/env/component/PatchComponentSitesPattern.java|31 col 9| Missing a Javadoc comment.
src/arcade/patch/env/component/PatchComponentSitesPattern.java|32 col 9| Missing a Javadoc comment.
src/arcade/patch/env/component/PatchComponentSitesPattern.java|33 col 9| Missing a Javadoc comment.
src/arcade/patch/env/component/PatchComponentSitesPattern.java|34 col 9| Missing a Javadoc comment.
src/arcade/patch/env/component/PatchComponentSitesPattern.java|35 col 9| Missing a Javadoc comment.
src/arcade/patch/env/component/PatchComponentSitesPattern.java|36 col 9| Missing a Javadoc comment.
src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java|31 col 9| Missing a Javadoc comment.
src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java|32 col 9| Missing a Javadoc comment.
src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java|33 col 9| Missing a Javadoc comment.
src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java|34 col 9| Missing a Javadoc comment.
src/arcade/patch/sim/PatchSimulationHex.java|10 col 1| Wrong order for 'arcade.patch.agent.action.PatchActionRadiation' import.
src/arcade/patch/sim/output/PatchOutputSerializer.java|148 col 15| Comment matches to-do format 'TODO:'.
src/arcade/patch/vis/PatchDrawer.java|48 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|49 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|50 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|51 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|52 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|53 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|54 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|55 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|60 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|61 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|62 col 9| Missing a Javadoc comment.

Filtered Findings (0)

Annotations

Check failure on line 1 in test/arcade/potts/sim/Potts3DTest.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] test/arcade/potts/sim/Potts3DTest.java#L1 <com.puppycrawl.tools.checkstyle.checks.sizes.FileLengthCheck> 

File length is 2,371 lines (max allowed is 2,000).
Raw output 
/github/workspace/./test/arcade/potts/sim/Potts3DTest.java:1:0: error: File length is 2,371 lines (max allowed is 2,000). (com.puppycrawl.tools.checkstyle.checks.sizes.FileLengthCheck)

Check failure on line 211 in test/arcade/potts/sim/Potts3DTest.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] test/arcade/potts/sim/Potts3DTest.java#L211 <com.puppycrawl.tools.checkstyle.checks.whitespace.EmptyForIteratorPadCheck> 

';' is followed by whitespace.
Raw output 
/github/workspace/./test/arcade/potts/sim/Potts3DTest.java:211:18: error: ';' is followed by whitespace. (com.puppycrawl.tools.checkstyle.checks.whitespace.EmptyForIteratorPadCheck)

Check failure on line 215 in src/arcade/potts/sim/PottsSeries.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/potts/sim/PottsSeries.java#L215 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck> 

Comment matches to-do format 'TODO:'.
Raw output 
/github/workspace/./src/arcade/potts/sim/PottsSeries.java:215:15: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)

Check failure on line 174 in src/arcade/potts/vis/PottsVisualization.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/potts/vis/PottsVisualization.java#L174 <com.puppycrawl.tools.checkstyle.checks.sizes.MethodLengthCheck> 

Method create3DDrawers length is 277 lines (max allowed is 150).
Raw output 
/github/workspace/./src/arcade/potts/vis/PottsVisualization.java:174:5: error: Method create3DDrawers length is 277 lines (max allowed is 150). (com.puppycrawl.tools.checkstyle.checks.sizes.MethodLengthCheck)

Check failure on line 41 in src/arcade/potts/vis/PottsDrawer.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L41 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck> 

Missing a Javadoc comment.
Raw output 
/github/workspace/./src/arcade/potts/vis/PottsDrawer.java:41:9: error: Missing a Javadoc comment. (com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck)

Check failure on line 42 in src/arcade/potts/vis/PottsDrawer.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L42 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck> 

Missing a Javadoc comment.
Raw output 
/github/workspace/./src/arcade/potts/vis/PottsDrawer.java:42:9: error: Missing a Javadoc comment. (com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck)

Check failure on line 43 in src/arcade/potts/vis/PottsDrawer.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L43 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck> 

Missing a Javadoc comment.
Raw output 
/github/workspace/./src/arcade/potts/vis/PottsDrawer.java:43:9: error: Missing a Javadoc comment. (com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck)

Check failure on line 48 in src/arcade/potts/vis/PottsDrawer.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L48 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck> 

Missing a Javadoc comment.
Raw output 
/github/workspace/./src/arcade/potts/vis/PottsDrawer.java:48:9: error: Missing a Javadoc comment. (com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck)

Check failure on line 49 in src/arcade/potts/vis/PottsDrawer.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L49 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck> 

Missing a Javadoc comment.
Raw output 
/github/workspace/./src/arcade/potts/vis/PottsDrawer.java:49:9: error: Missing a Javadoc comment. (com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck)

Check failure on line 50 in src/arcade/potts/vis/PottsDrawer.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L50 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck> 

Missing a Javadoc comment.
Raw output 
/github/workspace/./src/arcade/potts/vis/PottsDrawer.java:50:9: error: Missing a Javadoc comment. (com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck)

Check failure on line 51 in src/arcade/potts/vis/PottsDrawer.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L51 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck> 

Missing a Javadoc comment.
Raw output 
/github/workspace/./src/arcade/potts/vis/PottsDrawer.java:51:9: error: Missing a Javadoc comment. (com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck)

Check failure on line 52 in src/arcade/potts/vis/PottsDrawer.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L52 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck> 

Missing a Javadoc comment.
Raw output 
/github/workspace/./src/arcade/potts/vis/PottsDrawer.java:52:9: error: Missing a Javadoc comment. (com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck)

Check failure on line 53 in src/arcade/potts/vis/PottsDrawer.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L53 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck> 

Missing a Javadoc comment.
Raw output 
/github/workspace/./src/arcade/potts/vis/PottsDrawer.java:53:9: error: Missing a Javadoc comment. (com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck)

Check failure on line 54 in src/arcade/potts/vis/PottsDrawer.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L54 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck> 

Missing a Javadoc comment.
Raw output 
/github/workspace/./src/arcade/potts/vis/PottsDrawer.java:54:9: error: Missing a Javadoc comment. (com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck)

Check failure on line 374 in src/arcade/core/gui/GUI.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/core/gui/GUI.java#L374 <com.puppycrawl.tools.checkstyle.checks.design.FinalClassCheck> 

Class XMLFileFilter should be declared as final.
Raw output 
/github/workspace/./src/arcade/core/gui/GUI.java:374:5: error: Class XMLFileFilter should be declared as final. (com.puppycrawl.tools.checkstyle.checks.design.FinalClassCheck)

Check failure on line 1 in src/arcade/patch/agent/action/PatchActionRadiation.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/patch/agent/action/PatchActionRadiation.java#L1 <com.puppycrawl.tools.checkstyle.checks.NewlineAtEndOfFileCheck> 

File does not end with a newline.
Raw output 
/github/workspace/./src/arcade/patch/agent/action/PatchActionRadiation.java:1:0: error: File does not end with a newline. (com.puppycrawl.tools.checkstyle.checks.NewlineAtEndOfFileCheck)

Check failure on line 9 in src/arcade/patch/agent/action/PatchActionRadiation.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/patch/agent/action/PatchActionRadiation.java#L9 <com.puppycrawl.tools.checkstyle.checks.imports.UnusedImportsCheck> 

Unused import - arcade.core.env.location.Location.
Raw output 
/github/workspace/./src/arcade/patch/agent/action/PatchActionRadiation.java:9:8: error: Unused import - arcade.core.env.location.Location. (com.puppycrawl.tools.checkstyle.checks.imports.UnusedImportsCheck)

Check failure on line 28 in src/arcade/patch/agent/action/PatchActionRadiation.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/patch/agent/action/PatchActionRadiation.java#L28 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocStyleCheck> 

First sentence should end with a period.
Raw output 
/github/workspace/./src/arcade/patch/agent/action/PatchActionRadiation.java:28:0: error: First sentence should end with a period. (com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocStyleCheck)

Check failure on line 31 in src/arcade/patch/agent/action/PatchActionRadiation.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/patch/agent/action/PatchActionRadiation.java#L31 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocStyleCheck> 

First sentence should end with a period.
Raw output 
/github/workspace/./src/arcade/patch/agent/action/PatchActionRadiation.java:31:0: error: First sentence should end with a period. (com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocStyleCheck)

Check failure on line 34 in src/arcade/patch/agent/action/PatchActionRadiation.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/patch/agent/action/PatchActionRadiation.java#L34 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocStyleCheck> 

First sentence should end with a period.
Raw output 
/github/workspace/./src/arcade/patch/agent/action/PatchActionRadiation.java:34:0: error: First sentence should end with a period. (com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocStyleCheck)

Check failure on line 37 in src/arcade/patch/agent/action/PatchActionRadiation.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/patch/agent/action/PatchActionRadiation.java#L37 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocStyleCheck> 

First sentence should end with a period.
Raw output 
/github/workspace/./src/arcade/patch/agent/action/PatchActionRadiation.java:37:0: error: First sentence should end with a period. (com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocStyleCheck)

Check failure on line 40 in src/arcade/patch/agent/action/PatchActionRadiation.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/patch/agent/action/PatchActionRadiation.java#L40 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocStyleCheck> 

First sentence should end with a period.
Raw output 
/github/workspace/./src/arcade/patch/agent/action/PatchActionRadiation.java:40:0: error: First sentence should end with a period. (com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocStyleCheck)

Check failure on line 43 in src/arcade/patch/agent/action/PatchActionRadiation.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/patch/agent/action/PatchActionRadiation.java#L43 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocMethodCheck> 

Expected @param tag for 'series'.
Raw output 
/github/workspace/./src/arcade/patch/agent/action/PatchActionRadiation.java:43:40: error: Expected @param tag for 'series'. (com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocMethodCheck)

Check failure on line 43 in src/arcade/patch/agent/action/PatchActionRadiation.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/patch/agent/action/PatchActionRadiation.java#L43 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocMethodCheck> 

Expected @param tag for 'parameters'.
Raw output 
/github/workspace/./src/arcade/patch/agent/action/PatchActionRadiation.java:43:56: error: Expected @param tag for 'parameters'. (com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocMethodCheck)

Check failure on line 72 in src/arcade/patch/agent/action/PatchActionRadiation.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/patch/agent/action/PatchActionRadiation.java#L72 <LineLength> 

Line is longer than 100 characters (found 119).
Raw output 
/github/workspace/./src/arcade/patch/agent/action/PatchActionRadiation.java:72:0: error: Line is longer than 100 characters (found 119). (LineLength)
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