Remove cmd ctl repo to match with latest upstream

[rahulbabu95]

Description of changes:
Upstream cert-manager removed cmd ctl from their repo in their latest release. Consequently upgrader project is failing for this project as it is not able to build the cert-manager image as it still tries to the cmd-ctl.

/codebuild/output/src2067030760/src/git-codecommit.us-west-2.amazonaws.com/v1/repos/aws.eks-anywhere-build-tooling/tools/version-tracker/eks-anywhere-build-tooling/build/lib/go_mod_download.sh: line 29: cd: cert-manager/cmd/ctl: No such file or directory
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This change refactors the make targets to not include cmd-ctl to match that of the upstream.

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[eks-distro-bot]

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[eks-distro-bot]

@rahulbabu95: The following test failed, say /retest to rerun all failed tests or /retest-required to rerun all mandatory failed tests:

Test name	Commit	Details	Required	Rerun command
cert-manager-tooling-presubmit	29061a5	link	true	/test cert-manager-tooling-presubmit

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[rahulbabu95]

/hold

[sp1999]

Cert-manager is being bumped to v1.15.3 separately in this PR which removes the cmd ctl repo and adds the startupapicheck repo instead. Hence, closing this PR as it is no longer needed.