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* origin/main: (199 commits) [skip actions] Bump version to 0.3.1.9018 corrects typo chore: #221 update spelling ci: remove admiral string that was helping identifying action on UI revert deliberate errors Trigger CI ci: reusing workflows from admiralci [skip actions] Bump version to 0.3.1.9017 [skip actions] Bump version to 0.3.1.9016 Update pull_request_template.md chore: removed duplicated documentation section in news chore: breaking news - turn to channel 6! docs: #192 remove non-user functions from reference files docs: #230 #188 PR template tweaks [skip actions] Bump version to 0.3.1.9015 lint:reduce lenght of line Reduce line length less than 120 characters Update NEWS.md change argument name to length_source Change argument name to source_length in test-length ...
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,113 @@ | ||
| --- | ||
| name: xportr CI/CD Workflows | ||
|
|
||
| on: | ||
| # 'push' events are triggered when commits | ||
| # are pushed to one of these branches | ||
| push: | ||
| branches: | ||
| - main | ||
| tags: | ||
| - "v*" | ||
| # 'pull_request' events are triggered when PRs are | ||
| # created against one of these target branches. | ||
| pull_request: | ||
| types: | ||
| - opened | ||
| - synchronize | ||
| - reopened | ||
| - ready_for_review | ||
| branches: | ||
| - main | ||
| # 'workflow_dispatch' gives you the ability | ||
| # to run this workflow on demand, anytime | ||
| workflow_dispatch: | ||
|
|
||
| concurrency: | ||
| group: common-${{ github.event.pull_request.number || github.ref }} | ||
| cancel-in-progress: true | ||
|
|
||
| env: | ||
| R_VERSION: "release" | ||
|
|
||
| jobs: | ||
| # Get R version from environmental variable | ||
| # and use it in downstream jobs | ||
| get_r_version: | ||
| name: Get R version | ||
| runs-on: ubuntu-latest | ||
| outputs: | ||
| r-version: ${{ steps.get_r_version.outputs.R_VERSION }} | ||
| steps: | ||
| - name: Get R Version for Downstream Container Jobs | ||
| id: get_r_version | ||
| run: echo "R_VERSION=$R_VERSION" >> $GITHUB_OUTPUT | ||
| shell: bash | ||
|
|
||
| # Test code coverage of R Package | ||
| coverage: | ||
| name: Code Coverage | ||
| uses: pharmaverse/admiralci/.github/workflows/code-coverage.yml@main | ||
| if: > | ||
| github.event_name != 'release' | ||
| needs: get_r_version | ||
| with: | ||
| r-version: "${{ needs.get_r_version.outputs.r-version }}" | ||
| # Whether to skip code coverage badge creation | ||
| # Setting to 'false' will require you to create | ||
| # an orphan branch called 'badges' in your repository | ||
| skip-coverage-badges: true | ||
|
|
||
| # Ensure that styling guidelines are followed | ||
| style: | ||
| name: Code Style | ||
| uses: pharmaverse/admiralci/.github/workflows/style.yml@main | ||
| if: github.event_name == 'pull_request' | ||
| needs: get_r_version | ||
| with: | ||
| r-version: "${{ needs.get_r_version.outputs.r-version }}" | ||
|
|
||
| # Ensure there are no broken URLs in the package documentation | ||
| links: | ||
| name: Links | ||
| uses: pharmaverse/admiralci/.github/workflows/links.yml@main | ||
| if: github.event_name == 'pull_request' | ||
|
|
||
| # Build the website and deploy to `gh-pages` branch | ||
| site: | ||
| name: Documentation | ||
| uses: pharmaverse/admiralci/.github/workflows/pkgdown.yml@main | ||
| if: github.event_name == 'push' || startsWith(github.ref, 'refs/tags/v') | ||
| needs: get_r_version | ||
| with: | ||
| r-version: "release" | ||
| skip-multiversion-docs: true | ||
| secrets: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
|
|
||
| # Ensure there are no linter errors in the package | ||
| linter: | ||
| name: Lint | ||
| uses: pharmaverse/admiralci/.github/workflows/lintr.yml@main | ||
| if: github.event_name == 'pull_request' | ||
| needs: get_r_version | ||
| with: | ||
| r-version: "${{ needs.get_r_version.outputs.r-version }}" | ||
|
|
||
| # Ensure there are no spelling errors in the package | ||
| spellcheck: | ||
| name: Spelling | ||
| uses: pharmaverse/admiralci/.github/workflows/spellcheck.yml@main | ||
| if: github.event_name == 'pull_request' | ||
| needs: get_r_version | ||
| with: | ||
| r-version: "${{ needs.get_r_version.outputs.r-version }}" | ||
|
|
||
| # Bumps development version of the package | ||
| vbump: | ||
| name: Version Bump 🤜🤛 | ||
| if: github.event_name == 'push' | ||
| uses: insightsengineering/r.pkg.template/.github/workflows/version-bump.yaml@main | ||
| secrets: | ||
| REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }} | ||
|
|
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