Upgrade pip before installation of packages (#775)

* Upgrade pip before installation of packages

* Isolate no-deps

* Keep isolating no-deps

* Change the number of topics to check from 10 to 11. FIXME: externalise the list of topics inside a configuration file.

Dockerfile

@@ -54,7 +54,7 @@ RUN mkdir -p $FINK_HOME/deps
 # when fink-broker code changes
 ENV PIP_NO_CACHE_DIR 1
 ADD deps/requirements.txt $FINK_HOME/deps
-RUN pip install -r $FINK_HOME/deps/requirements.txt
+RUN pip install --no-cache-dir --upgrade pip setuptools wheel && pip install -r $FINK_HOME/deps/requirements.txt
 
 RUN git clone -c advice.detachedHead=false --depth 1 -b "latest" --single-branch https://github.com/astrolabsoftware/fink-alert-schemas.git
 

deps/requirements-science-no-deps.txt

@@ -0,0 +1,13 @@
+# fink-fat
+fink_fat @ https://github.com/FusRoman/fink-fat/archive/v0.16.0.zip
+sbpy
+
+# Fink MM
+fink_MM @ https://github.com/FusRoman/Fink_MM/archive/v0.16.10.zip
+
+# Installation of torch without GPU support (lighter)
+-f https://download.pytorch.org/whl/torch_stable.html
+torch==1.12.0+cpu
+
+# Astronet
+-e git+https://github.com/tallamjr/astronet.git#egg=astronet

deps/requirements-science.txt

@@ -22,10 +22,6 @@ iminuit==2.21.0
 # kilonova @ sklearn==1.0.2
 -e git+https://github.com/b-biswas/kndetect@kndetect#egg=kndetect
 
-# Installation of torch without GPU support (lighter)
--f https://download.pytorch.org/whl/torch_stable.html
-torch==1.12.0+cpu
-
 # CATS dependencies
 tensorflow==2.9.2
 tensorflow_addons==0.18.0
@@ -35,11 +31,9 @@ onnx==1.12.0
 onnxruntime
 
 # fink-fat
-fink_fat @ https://github.com/FusRoman/fink-fat/archive/v0.16.0.zip --install-option="--no-deps"
 sbpy
 
 # Fink MM
-fink_MM @ https://github.com/FusRoman/Fink_MM/archive/v0.16.10.zip --install-option="--no-deps"
 gcn-kafka==0.3.0
 voevent-parse==1.0.3
 tabulate==0.9.0
@@ -50,7 +44,6 @@ importlib-resources==5.9.0
 pandera==0.14.5
 
 # Installation of astronet
--e git+https://github.com/tallamjr/astronet.git#egg=astronet --install-option="--no-deps"
 imbalanced-learn==0.7.0
 optuna==2.3.0
 george