Network analysis of cell communities
cytoNet is a cloud-based image analysis software designed to quantify the structure of cell communities from microscope images using principles of graph theory.
The cytoNet web interface can be accessed here. Instructions on using the web interface can be found here.
If you use cytoNet, please refer to and cite our paper.
The scripts in this repository were developed in MATLAB 2021a. To use standalone scripts as part of your analysis, clone the repository and add the directory and sub-directories to your path. To perform spatial analysis, run the scripts in the SpatialNetworkAnalysis folder. To perform functional analysis, run the scripts in the FunctionalNetworkAnalysis folder.