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diff --git a/WS1/intro_to_ws1.html b/WS1/intro_to_ws1.html
@@ -228,13 +228,41 @@
 <p aria-level="2" class="caption" role="heading"><span class="caption-text">Model-based Techniques (WS2)</span></p>
 <ul class="nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="../WS2/intro_to_ws2.html">Introduction to workshop 2</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../WS2/module_1/0_intro_module_1.html">Module 1</a></li>
+<li class="toctree-l1 has-children"><a class="reference internal" href="../WS2/module_1/0_intro_module_1.html">Module 1</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../WS2/module_1/1_Fermentation_Scerevisiae_Lignocellulosic_Batch.html">Mechanistic model of <em>S. cerevisiae</em> utilizing ligocellulosis in batch fermentation</a></li>
+
+
+
+<li class="toctree-l2"><a class="reference internal" href="../WS2/module_1/2_Fermentation_Scerevisiae_Glucose_Aerobic_CSTR.html">Mechanistic model of <em>S. cerevisiae</em> in continous stirred tank reactor under aerobic conditions</a></li>
+
+
+
+<li class="toctree-l2"><a class="reference internal" href="../WS2/module_1/3_Fermentation_MonodHerbert_aerobic.html">Aerobic fermentation model (S. cerevisiae)</a></li>
+
+
+
+
+<li class="toctree-l2"><a class="reference internal" href="../WS2/module_1/4_FedBatch_Ecoli_simulation_proteinproduction.html">E. coli Fed-batch fermentation model, including recombinant protein production</a></li>
+
+
+
+
+
+
+
+
+
+</ul>
+</details></li>
 <li class="toctree-l1 has-children"><a class="reference internal" href="../WS2/module_2/0_intro_module_2.html">Module 2</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
 <li class="toctree-l2"><a class="reference internal" href="../WS2/module_2/1_dd_classification.html">Classification</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../WS2/module_2/2_dd_regression.html">Regression</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../WS2/module_2/3_dd_regression.html">Regression</a></li>
+</ul>
+</details></li>
+<li class="toctree-l1 has-children"><a class="reference internal" href="../WS2/module_3/0_intro_module_3.html">Module 3</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../WS2/module_3/1_hyb_regression.html">Exercise</a></li>
 </ul>
 </details></li>
-<li class="toctree-l1"><a class="reference internal" href="../WS2/module_3/0_intro_module_3.html">Exercice 1</a></li>
 </ul>
 
     </div>

diff --git a/WS1/module_1/0_python_basics.html b/WS1/module_1/0_python_basics.html
@@ -230,13 +230,41 @@
 <p aria-level="2" class="caption" role="heading"><span class="caption-text">Model-based Techniques (WS2)</span></p>
 <ul class="nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="../../WS2/intro_to_ws2.html">Introduction to workshop 2</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../WS2/module_1/0_intro_module_1.html">Module 1</a></li>
+<li class="toctree-l1 has-children"><a class="reference internal" href="../../WS2/module_1/0_intro_module_1.html">Module 1</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_1/1_Fermentation_Scerevisiae_Lignocellulosic_Batch.html">Mechanistic model of <em>S. cerevisiae</em> utilizing ligocellulosis in batch fermentation</a></li>
+
+
+
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_1/2_Fermentation_Scerevisiae_Glucose_Aerobic_CSTR.html">Mechanistic model of <em>S. cerevisiae</em> in continous stirred tank reactor under aerobic conditions</a></li>
+
+
+
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_1/3_Fermentation_MonodHerbert_aerobic.html">Aerobic fermentation model (S. cerevisiae)</a></li>
+
+
+
+
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_1/4_FedBatch_Ecoli_simulation_proteinproduction.html">E. coli Fed-batch fermentation model, including recombinant protein production</a></li>
+
+
+
+
+
+
+
+
+
+</ul>
+</details></li>
 <li class="toctree-l1 has-children"><a class="reference internal" href="../../WS2/module_2/0_intro_module_2.html">Module 2</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
 <li class="toctree-l2"><a class="reference internal" href="../../WS2/module_2/1_dd_classification.html">Classification</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_2/2_dd_regression.html">Regression</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_2/3_dd_regression.html">Regression</a></li>
+</ul>
+</details></li>
+<li class="toctree-l1 has-children"><a class="reference internal" href="../../WS2/module_3/0_intro_module_3.html">Module 3</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_3/1_hyb_regression.html">Exercise</a></li>
 </ul>
 </details></li>
-<li class="toctree-l1"><a class="reference internal" href="../../WS2/module_3/0_intro_module_3.html">Exercice 1</a></li>
 </ul>
 
     </div>

diff --git a/WS1/module_1/1_hello_world.html b/WS1/module_1/1_hello_world.html
@@ -228,13 +228,41 @@
 <p aria-level="2" class="caption" role="heading"><span class="caption-text">Model-based Techniques (WS2)</span></p>
 <ul class="nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="../../WS2/intro_to_ws2.html">Introduction to workshop 2</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../WS2/module_1/0_intro_module_1.html">Module 1</a></li>
+<li class="toctree-l1 has-children"><a class="reference internal" href="../../WS2/module_1/0_intro_module_1.html">Module 1</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_1/1_Fermentation_Scerevisiae_Lignocellulosic_Batch.html">Mechanistic model of <em>S. cerevisiae</em> utilizing ligocellulosis in batch fermentation</a></li>
+
+
+
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_1/2_Fermentation_Scerevisiae_Glucose_Aerobic_CSTR.html">Mechanistic model of <em>S. cerevisiae</em> in continous stirred tank reactor under aerobic conditions</a></li>
+
+
+
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_1/3_Fermentation_MonodHerbert_aerobic.html">Aerobic fermentation model (S. cerevisiae)</a></li>
+
+
+
+
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_1/4_FedBatch_Ecoli_simulation_proteinproduction.html">E. coli Fed-batch fermentation model, including recombinant protein production</a></li>
+
+
+
+
+
+
+
+
+
+</ul>
+</details></li>
 <li class="toctree-l1 has-children"><a class="reference internal" href="../../WS2/module_2/0_intro_module_2.html">Module 2</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
 <li class="toctree-l2"><a class="reference internal" href="../../WS2/module_2/1_dd_classification.html">Classification</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_2/2_dd_regression.html">Regression</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_2/3_dd_regression.html">Regression</a></li>
+</ul>
+</details></li>
+<li class="toctree-l1 has-children"><a class="reference internal" href="../../WS2/module_3/0_intro_module_3.html">Module 3</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_3/1_hyb_regression.html">Exercise</a></li>
 </ul>
 </details></li>
-<li class="toctree-l1"><a class="reference internal" href="../../WS2/module_3/0_intro_module_3.html">Exercice 1</a></li>
 </ul>
 
     </div>

diff --git a/WS1/module_1/2_statements.html b/WS1/module_1/2_statements.html
@@ -230,13 +230,41 @@
 <p aria-level="2" class="caption" role="heading"><span class="caption-text">Model-based Techniques (WS2)</span></p>
 <ul class="nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="../../WS2/intro_to_ws2.html">Introduction to workshop 2</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../WS2/module_1/0_intro_module_1.html">Module 1</a></li>
+<li class="toctree-l1 has-children"><a class="reference internal" href="../../WS2/module_1/0_intro_module_1.html">Module 1</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_1/1_Fermentation_Scerevisiae_Lignocellulosic_Batch.html">Mechanistic model of <em>S. cerevisiae</em> utilizing ligocellulosis in batch fermentation</a></li>
+
+
+
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_1/2_Fermentation_Scerevisiae_Glucose_Aerobic_CSTR.html">Mechanistic model of <em>S. cerevisiae</em> in continous stirred tank reactor under aerobic conditions</a></li>
+
+
+
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_1/3_Fermentation_MonodHerbert_aerobic.html">Aerobic fermentation model (S. cerevisiae)</a></li>
+
+
+
+
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_1/4_FedBatch_Ecoli_simulation_proteinproduction.html">E. coli Fed-batch fermentation model, including recombinant protein production</a></li>
+
+
+
+
+
+
+
+
+
+</ul>
+</details></li>
 <li class="toctree-l1 has-children"><a class="reference internal" href="../../WS2/module_2/0_intro_module_2.html">Module 2</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
 <li class="toctree-l2"><a class="reference internal" href="../../WS2/module_2/1_dd_classification.html">Classification</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_2/2_dd_regression.html">Regression</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_2/3_dd_regression.html">Regression</a></li>
+</ul>
+</details></li>
+<li class="toctree-l1 has-children"><a class="reference internal" href="../../WS2/module_3/0_intro_module_3.html">Module 3</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_3/1_hyb_regression.html">Exercise</a></li>
 </ul>
 </details></li>
-<li class="toctree-l1"><a class="reference internal" href="../../WS2/module_3/0_intro_module_3.html">Exercice 1</a></li>
 </ul>
 
     </div>
@@ -784,7 +812,7 @@ <h2>3. Lists and generators<a class="headerlink" href="#lists-and-generators" ti
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&lt;generator object &lt;genexpr&gt; at 0x000001BA79CE3060&gt;
+<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&lt;generator object &lt;genexpr&gt; at 0x0000026C130C34C0&gt;
 </pre></div>
 </div>
 </div>

diff --git a/WS1/module_1/3_control_flow.html b/WS1/module_1/3_control_flow.html
@@ -228,13 +228,41 @@
 <p aria-level="2" class="caption" role="heading"><span class="caption-text">Model-based Techniques (WS2)</span></p>
 <ul class="nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="../../WS2/intro_to_ws2.html">Introduction to workshop 2</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../WS2/module_1/0_intro_module_1.html">Module 1</a></li>
+<li class="toctree-l1 has-children"><a class="reference internal" href="../../WS2/module_1/0_intro_module_1.html">Module 1</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_1/1_Fermentation_Scerevisiae_Lignocellulosic_Batch.html">Mechanistic model of <em>S. cerevisiae</em> utilizing ligocellulosis in batch fermentation</a></li>
+
+
+
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_1/2_Fermentation_Scerevisiae_Glucose_Aerobic_CSTR.html">Mechanistic model of <em>S. cerevisiae</em> in continous stirred tank reactor under aerobic conditions</a></li>
+
+
+
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_1/3_Fermentation_MonodHerbert_aerobic.html">Aerobic fermentation model (S. cerevisiae)</a></li>
+
+
+
+
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_1/4_FedBatch_Ecoli_simulation_proteinproduction.html">E. coli Fed-batch fermentation model, including recombinant protein production</a></li>
+
+
+
+
+
+
+
+
+
+</ul>
+</details></li>
 <li class="toctree-l1 has-children"><a class="reference internal" href="../../WS2/module_2/0_intro_module_2.html">Module 2</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
 <li class="toctree-l2"><a class="reference internal" href="../../WS2/module_2/1_dd_classification.html">Classification</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_2/2_dd_regression.html">Regression</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_2/3_dd_regression.html">Regression</a></li>
+</ul>
+</details></li>
+<li class="toctree-l1 has-children"><a class="reference internal" href="../../WS2/module_3/0_intro_module_3.html">Module 3</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_3/1_hyb_regression.html">Exercise</a></li>
 </ul>
 </details></li>
-<li class="toctree-l1"><a class="reference internal" href="../../WS2/module_3/0_intro_module_3.html">Exercice 1</a></li>
 </ul>
 
     </div>
@@ -645,15 +673,18 @@ <h2>Repetition<a class="headerlink" href="#repetition" title="Link to this headi
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Row [0.16550853 0.65175605 0.02492288]
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-Element 0.472260420990256
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+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Row
+</pre></div>
+</div>
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span> [0.68736936 0.20126193 0.04658199]
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+Row [0.57064357 0.57116666 0.75163354]
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 </div>
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@@ -723,9 +754,7 @@ <h2>Continue and Break<a class="headerlink" href="#continue-and-break" title="Li
 </div>
 <div class="cell_output docutils container">
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>8
-</pre></div>
-</div>
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>9
+9
 10
 11
 12

diff --git a/WS1/module_1/4_exercise_1.html b/WS1/module_1/4_exercise_1.html
@@ -228,13 +228,41 @@
 <p aria-level="2" class="caption" role="heading"><span class="caption-text">Model-based Techniques (WS2)</span></p>
 <ul class="nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="../../WS2/intro_to_ws2.html">Introduction to workshop 2</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../WS2/module_1/0_intro_module_1.html">Module 1</a></li>
+<li class="toctree-l1 has-children"><a class="reference internal" href="../../WS2/module_1/0_intro_module_1.html">Module 1</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_1/1_Fermentation_Scerevisiae_Lignocellulosic_Batch.html">Mechanistic model of <em>S. cerevisiae</em> utilizing ligocellulosis in batch fermentation</a></li>
+
+
+
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_1/2_Fermentation_Scerevisiae_Glucose_Aerobic_CSTR.html">Mechanistic model of <em>S. cerevisiae</em> in continous stirred tank reactor under aerobic conditions</a></li>
+
+
+
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_1/3_Fermentation_MonodHerbert_aerobic.html">Aerobic fermentation model (S. cerevisiae)</a></li>
+
+
+
+
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_1/4_FedBatch_Ecoli_simulation_proteinproduction.html">E. coli Fed-batch fermentation model, including recombinant protein production</a></li>
+
+
+
+
+
+
+
+
+
+</ul>
+</details></li>
 <li class="toctree-l1 has-children"><a class="reference internal" href="../../WS2/module_2/0_intro_module_2.html">Module 2</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
 <li class="toctree-l2"><a class="reference internal" href="../../WS2/module_2/1_dd_classification.html">Classification</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_2/2_dd_regression.html">Regression</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_2/3_dd_regression.html">Regression</a></li>
+</ul>
+</details></li>
+<li class="toctree-l1 has-children"><a class="reference internal" href="../../WS2/module_3/0_intro_module_3.html">Module 3</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
+<li class="toctree-l2"><a class="reference internal" href="../../WS2/module_3/1_hyb_regression.html">Exercise</a></li>
 </ul>
 </details></li>
-<li class="toctree-l1"><a class="reference internal" href="../../WS2/module_3/0_intro_module_3.html">Exercice 1</a></li>
 </ul>
 
     </div>