Merge pull request #619 from Sichao25/upgrade

Debug vectorfield given layer input
aristoteleo · Feb 20, 2024 · dcd96b5 · dcd96b5
2 parents e30d9b6 + 80f77d2
commit dcd96b5
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/dynamo/vectorfield/topography.py b/dynamo/vectorfield/topography.py
@@ -1007,6 +1007,7 @@ def VectorField(
             X = np.expm1(X)
         else:
             X = inverse_norm(adata, adata.layers[layer])
+            X = X[:, adata.var_names.get_indexer(valid_genes)]
 
         V = adata[:, valid_genes].layers[velocity_key].copy()