[FIX] Fix pet-linear with option --save_pet_in_t1w_space (#1402)

* Fix connections in pet-linear * Use the option in non regression test (will require updating the CI data...)
aramis-lab · Dec 4, 2024 · 592ae02 · 592ae02
1 parent 7436f44
commit 592ae02
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diff --git a/clinica/pipelines/pet/linear/pipeline.py b/clinica/pipelines/pet/linear/pipeline.py
@@ -500,7 +500,12 @@ def _build_core_nodes(self):
                     (
                         clipping_node,
                         ants_applytransform_optional_node,
-                        [("output_image", "input_image"), ("t1w", "reference_image")],
+                        [("output_image", "input_image")],
+                    ),
+                    (
+                        self.input_node,
+                        ants_applytransform_optional_node,
+                        [("t1w", "reference_image")],
                     ),
                     (
                         ants_registration_node,

diff --git a/test/nonregression/pipelines/pet/test_pet_linear.py b/test/nonregression/pipelines/pet/test_pet_linear.py
@@ -23,6 +23,7 @@ def run_pet_linear(
     parameters = {
         "acq_label": Tracer.FDG,
         "suvr_reference_region": SUVRReferenceRegion.PONS,
+        "save_PETinT1w": True,
     }
 
     pipeline = PETLinear(