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araastat · Sep 18, 2024 · bc7ed05 · bc7ed05
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diff --git a/.nojekyll b/.nojekyll
@@ -1 +1 @@
-a14d1309
+bc4df843
diff --git a/01-technical-background.html b/01-technical-background.html
@@ -359,7 +359,7 @@
 };
 
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+globalThis.qwebrCellDetails = [{"options":{"classes":"","out-width":"700px","warning":"true","output":"true","label":"unnamed-chunk-1","context":"interactive","editor-font-scale":"1","results":"markup","autorun":"false","read-only":"false","dpi":72,"comment":"","message":"true","fig-cap":"","fig-width":7,"out-height":"","fig-height":5,"editor-max-height":"","editor-quick-suggestions":"false","editor-word-wrap":"true"},"code":"lambda = 1\nx <- seq(0, 10, by = 0.1)\ny <- dexp(x, rate = lambda)\nplot(x, y, type ='l')","id":1},{"options":{"classes":"","out-width":"700px","warning":"true","output":"true","label":"unnamed-chunk-2","context":"interactive","editor-font-scale":"1","results":"markup","autorun":"false","read-only":"false","dpi":72,"comment":"","message":"true","fig-cap":"","fig-width":7,"out-height":"","fig-height":5,"editor-max-height":"","editor-quick-suggestions":"false","editor-word-wrap":"true"},"code":"alpha = 1\nbeta = 1\ny = dweibull(x, shape = alpha, scale = beta)\nplot(x, y, type = 'l')","id":2}];
 
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diff --git a/chapters/week-01.html b/chapters/week-01.html
@@ -172,18 +172,6 @@
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diff --git a/chapters/week-02.html b/chapters/week-02.html
@@ -352,7 +352,7 @@
 };
 
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+globalThis.qwebrCellDetails = [{"code":"set.seed(1000)\ninstall.packages(\"tidyverse\")\nlibrary(tidyverse)\nm1 <- 0\nm2 <- 0.2\ns <- 0.5\nn <- 10 # number of samples we observe in 1 expt (replicates)\nnsim <- 1000 # number of simulated expts\n\n# compute sampling distributions\nx1 <- replicate(nsim, mean(rnorm(n, m1, s)))\nx2 <- replicate(nsim, mean(rnorm(n, m2, s)))\n\ndr <- sqrt(n) * (x2 - x1) / (2 * s^2) > qnorm(0.95)\npower <- mean(dr)\n\nd <- tibble(x = c(x1, x2), grp = factor(c(rep(1, nsim), rep(2, nsim))))\n\nggplot(d, aes(x, color = grp)) +\n  geom_density() +\n  geom_vline(xintercept = sqrt(2) * s / sqrt(n)) +\n  scale_x_continuous(limits = c(-1, 1)) +\n  theme_bw() +\n  labs(title = paste0(\"Power = \", power))","id":1,"options":{"results":"markup","editor-font-scale":"1","context":"interactive","editor-word-wrap":"true","out-width":"700px","label":"unnamed-chunk-1","fig-cap":"","editor-quick-suggestions":"false","message":"true","fig-height":5,"comment":"","classes":"","editor-max-height":"","output":"true","warning":"true","autorun":"false","read-only":"false","fig-width":7,"dpi":72,"out-height":""}}];
 
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 // Declare startupMessageQWebR globally
@@ -1631,18 +1631,6 @@
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diff --git a/chapters/week-03.html b/chapters/week-03.html
@@ -206,18 +206,6 @@
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diff --git a/chapters/week-04.html b/chapters/week-04.html
@@ -125,18 +125,6 @@
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diff --git a/chapters/week-05.html b/chapters/week-05.html
@@ -186,18 +186,6 @@
   <a href="../chapters/week-05.html" class="sidebar-item-text sidebar-link active">
  <span class="menu-text"><span class="chapter-number">5</span>&nbsp; <span class="chapter-title">Survival analysis I</span></span></a>
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 </li>
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diff --git a/chapters/week-06.html b/chapters/week-06.html
@@ -125,18 +125,6 @@
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- <span class="menu-text"><span class="chapter-number">13</span>&nbsp; <span class="chapter-title">Decision making</span></span></a>
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 </li>
         <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 

diff --git a/chapters/week-07.html b/chapters/week-07.html
@@ -125,18 +125,6 @@
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         <li class="sidebar-item sidebar-item-section">
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diff --git a/chapters/week-08.html b/chapters/week-08.html
@@ -125,18 +125,6 @@
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 </li>
         <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 

diff --git a/chapters/week-09.html b/chapters/week-09.html
@@ -125,18 +125,6 @@
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       <div class="sidebar-item-container"> 

diff --git a/chapters/week-10.html b/chapters/week-10.html
@@ -125,18 +125,6 @@
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- <span class="menu-text"><span class="chapter-number">13</span>&nbsp; <span class="chapter-title">Decision making</span></span></a>
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 </li>
         <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 

diff --git a/chapters/week-11.html b/chapters/week-11.html
@@ -125,18 +125,6 @@
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  <span class="menu-text"><span class="chapter-number">5</span>&nbsp; <span class="chapter-title">Survival analysis I</span></span></a>
   </div>
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- <span class="menu-text"><span class="chapter-number">13</span>&nbsp; <span class="chapter-title">Decision making</span></span></a>
-  </div>
 </li>
         <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 

diff --git a/chapters/week-12.html b/chapters/week-12.html
@@ -62,12 +62,12 @@
     "search-submit-button-title": "Submit",
     "search-label": "Search"
   }
-}</script>
+}</script><meta name="quarto:status" content="draft">
 </head>
 <body class="nav-sidebar floating nav-fixed">
 
 <div id="quarto-search-results"></div>
-  <header id="quarto-header" class="headroom fixed-top"><nav class="navbar navbar-expand-lg " data-bs-theme="dark"><div class="navbar-container container-fluid">
+  <header id="quarto-header" class="headroom fixed-top"><div id="quarto-draft-alert" class="alert alert-warning"><i class="bi bi-pencil-square"></i>Draft</div><nav class="navbar navbar-expand-lg " data-bs-theme="dark"><div class="navbar-container container-fluid">
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-  <div class="sidebar-item-container"> 
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-  <a href="../chapters/week-13.html" class="sidebar-item-text sidebar-link">
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-  </div>
 </li>
         <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 

diff --git a/chapters/week-13.html b/chapters/week-13.html
@@ -62,12 +62,12 @@
     "search-submit-button-title": "Submit",
     "search-label": "Search"
   }
-}</script>
+}</script><meta name="quarto:status" content="draft">
 </head>
 <body class="nav-sidebar floating nav-fixed">
 
 <div id="quarto-search-results"></div>
-  <header id="quarto-header" class="headroom fixed-top"><nav class="navbar navbar-expand-lg " data-bs-theme="dark"><div class="navbar-container container-fluid">
+  <header id="quarto-header" class="headroom fixed-top"><div id="quarto-draft-alert" class="alert alert-warning"><i class="bi bi-pencil-square"></i>Draft</div><nav class="navbar navbar-expand-lg " data-bs-theme="dark"><div class="navbar-container container-fluid">
       <div class="navbar-brand-container mx-auto">
     <a class="navbar-brand" href="../index.html">
     <span class="navbar-title">Biological and Biomedical Data Science (</span></a><a href="https://gu-dsan.github.io/6150-fall-2024/" target="_blank">DSAN 6150</a>)
@@ -125,18 +125,6 @@
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-  <a href="../chapters/week-13.html" class="sidebar-item-text sidebar-link active">
- <span class="menu-text"><span class="chapter-number">13</span>&nbsp; <span class="chapter-title">Decision making</span></span></a>
-  </div>
 </li>
         <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container">