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  • Public Health Agency of Canada

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@phac-nml

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  1. phac-nml/irida phac-nml/irida Public

    Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

    Java 40 31

  2. phac-nml/staramr phac-nml/staramr Public

    Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

    Python 120 26

  3. genomics-data-index genomics-data-index Public

    Indexes genomes using SNVs, MLST, or kmers for rapid querying, clustering, and visualization.

    Python 12 1

  4. snvphyl-galaxy snvphyl-galaxy Public

    Shell 2 1

  5. orthomcl-pipeline orthomcl-pipeline Public

    Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/

    Perl 80 36

  6. arpcard/card-live-dashboard arpcard/card-live-dashboard Public

    Python 2 2