manifold_learning

Jupyter Notebooks for the ManifoldEM Python Suite

Installation Requirements

conda create -n manifold_learning python=3.10

conda activate manifold_learning 

conda install -c conda-forge pyqt=5 

pip install notebook==6 seaborn mrcfile scipy nptyping scikit-learn numba tqdm imageio toml

Downloading the sample cryo-EM data for the notebooks

wget -P ~/manifold_learning https://zenodo.org/records/10728025/files/data.zip?download=1

cd ~/manifold_learning

unzip 'data.zip?download=1'

rm 'data.zip?download=1'

Copyright

Copyright (c) 2024, Anupam Anand Ojha

Acknowledgements

Project based on the Computational Molecular Science Python Cookiecutter version 1.1.