fix: added new freesurfer settings file, and fixed the style a little…

… bit
akeshavan · Jun 23, 2017 · 2bfec89 · 2bfec89
1 parent 51f92f9
commit 2bfec89
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Showing 2 changed files with 163 additions and 2 deletions.
diff --git a/client/main.css b/client/main.css
@@ -2,6 +2,11 @@ body {
   padding-top: 50px;
 }
 
+#metric-select {
+  margin-bottom: 10px;
+  margin-top: 10px;
+}
+
 .container {
     margin-left: 300px
 }
@@ -368,5 +373,3 @@ h4 td, th{
     color: #333;
     white-space: nowrap;
     }
-
-
diff --git a/settings_freesurfer.json b/settings_freesurfer.json
@@ -0,0 +1,158 @@
+{
+  "public": {
+    "startup_json":"https://dl.dropboxusercontent.com/s/vnohn5nh9ho3j8a/data_rf.json?dl=0",
+    "modules": [
+    {
+        "name": "Brainmask",
+        "entry_type": "brainmask",
+        "fields": [
+          {
+            "function_name": "get_filter_field",
+            "id": "subject_id",
+            "name": "Exam ID"
+          },
+          {
+            "function_name": "get_qc_viewer",
+            "id": "name",
+            "name": "Freesurfer ID"
+          },
+          {
+            "function_name": "get_qc_filter_field",
+            "id": "quality_check.QC",
+            "name": "QC"
+          },
+          {
+            "function_name": "get_filter_field",
+            "id": "checkedBy",
+            "name": "checked by"
+          },
+          {
+            "function_name": "get_filter_field",
+            "id": "quality_check.user_assign",
+            "name": "Assigned To"
+          },
+          {
+            "function_name": null,
+            "id": "quality_check.notes_QC",
+            "name": "Notes"
+          }
+        ],
+        "graph_type": "histogram",
+        "colormaps": {
+          "0":{"name": "Grayscale",
+              "alpha": 1,
+              "min": 0,
+              "max": 255
+          },
+          "1": {
+            "name": "Red Overlay",
+            "alpha": 0.2,
+            "min": 0,
+            "max": 2000
+          }
+        },
+        "staticURL": "http://localhost:3002/",
+        "usePeerJS": true
+      },
+  {
+        "name": "White Matter",
+        "entry_type": "wm",
+        "fields": [
+          {
+            "function_name": "get_filter_field",
+            "id": "subject_id",
+            "name": "Exam ID"
+          },
+          {
+            "function_name": "get_qc_viewer",
+            "id": "name",
+            "name": "Freesurfer ID"
+          },
+          {
+            "function_name": "get_qc_filter_field",
+            "id": "quality_check.QC",
+            "name": "QC"
+          },
+          {
+            "function_name": "get_filter_field",
+            "id": "checkedBy",
+            "name": "checked by"
+          },
+          {
+            "function_name": "get_filter_field",
+            "id": "quality_check.user_assign",
+            "name": "Assigned To"
+          },
+          {
+            "function_name": null,
+            "id": "quality_check.notes_QC",
+            "name": "Notes"
+          }
+        ],
+        "graph_type": "histogram",
+        "colormaps": {
+          "0":{"name": "Grayscale",
+              "alpha": 1,
+              "min": 0,
+              "max": 255
+          },
+          "1": {
+            "name": "Spectrum",
+            "alpha": 0.5
+          }
+        },
+        "staticURL": "http://localhost:3002/",
+        "usePeerJS": true
+      },
+  {
+        "name": "Segmentation",
+        "entry_type": "aparcaseg",
+        "fields": [
+          {
+            "function_name": "get_filter_field",
+            "id": "subject_id",
+            "name": "Exam ID"
+          },
+          {
+            "function_name": "get_qc_viewer",
+            "id": "name",
+            "name": "Freesurfer ID"
+          },
+          {
+            "function_name": "get_qc_filter_field",
+            "id": "quality_check.QC",
+            "name": "QC"
+          },
+          {
+            "function_name": "get_filter_field",
+            "id": "checkedBy",
+            "name": "checked by"
+          },
+          {
+            "function_name": "get_filter_field",
+            "id": "quality_check.user_assign",
+            "name": "Assigned To"
+          },
+          {
+            "function_name": null,
+            "id": "quality_check.notes_QC",
+            "name": "Notes"
+          }
+        ],
+        "graph_type": "histogram",
+        "colormaps": {
+          "0":{"name": "Grayscale",
+              "alpha": 1,
+              "min": 0,
+              "max": 255
+          },
+          "1": {
+            "name": "custom.Freesurfer",
+            "alpha": 0.5
+          }
+        },
+        "staticURL": "http://localhost:3002/",
+        "usePeerJS": true
+      }]
+}
+}