fixed problem with naming optdups versus opt_dups

aidenlab · Jun 16, 2017 · a21d3b3 · a21d3b3
1 parent f8c584a
commit a21d3b3
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/CPU/juicer.sh b/CPU/juicer.sh
@@ -474,7 +474,11 @@ fi
 #REMOVE DUPLICATES
 if [ -z $final ] && [ -z $postproc ]
 then
+    touch ${outputdir}/dups.txt
+    touch ${outputdir}/optdups.txt
+    touch ${outputdir}/merged_nodups.txt
     awk -f ${juiceDir}/scripts/common/dups.awk -v name=${outputdir}/ ${outputdir}/merged_sort.txt
+    mv ${outputdir}/optdups.txt ${outputdir}/opt_dups.txt # for consistency with cluster naming in split_rmdups
 fi
 if [ -z "$genomePath" ]
 then