PySEP v0.5.0 #130
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PySEP v0.5.0 #130
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…GLOBE format, previously could only handle 3D_CARTESIAN. adds more detailed docstring for the function
…'origin_time' to match other read functions and be slightly more intuitive
…an a PySEP SOURCE object, so that it can be parsed and used by Pyflex which is expecting ObsPy Event or Catalog objects to define sources
…h provides additional file format support to ObsPy's read_events function
… in FORCESOLUTION and SOURCE files from SPECFEM2D/3D. the revised method simply returns barebones ObsPy Event objects which is much cleaner and avoids requiring having to define an entirely new class. Does not affect PySEP routines, these were mainly used by external libraries calling PySEP
…ix zero trace length (#121) * bumping version numbers to 0.5.0-dev to signify backwards-incompatible changes and that this is the 'dev' version of the code * Issue #120 single-sourcing version number from pyproject.toml and sourcing version number in docs and __init__ directly from this value * code fix conf finding version number, update 'how_to_version_release' to only bump pyproject.toml version number * #117 added a new pre-preprocessing curtail function that removes Traces whose trace lenght is 0 * #116 RecSec now logs amplitude and amplitude ratios if both obs and syn are plotted together * amp ratio log messages now for abs max * update CHANGELOG
…by setting default origin time to 1970-01-01T00:00:00 directly in the input variables
…, read_events_plus)
* bugfix: xlim_s was using time and not sample to index the waveform when selecting max amplitudes for normalization, causing incorrect normalization to occur * tests caught edge case where indicies were None and could not be converted to integer samples. fixing
* BUGFIX: in read_events_plus, read_specfem3d_cmtsolution_cartesian was returning an Event and not a catalog object. This was probably fine but not consistent with the other returns * new recsec.read_data function that replaces the old generate_synthetic_data function, contains logic for taking paths and return streams and can handle both obs and syn data as well as SAC formatted syn data (#122) bugfix: added a catch in recsec to kill the object if no stream data are found * API CHANGE: RecSec parameter 'cmtsolution' has been changed to 'source' for generality because the file does not need to be a cmtsolution, can be a forcesolution or source as well * small bugfixes to get synthetic stream reading working * adding Cartesian generated synthetics to test data and added new test data to make sure read_sem can handle these appropriately * removing some of the test data, only need a few traces * update API recsec cmtsolution -> source * update changelog
…parameter added '--srcfmt' which allows the User to set the file format manually. If srcfmt is not provided, RecSec will attempt to guess the file format based on the file name, checking against a list of common SPECFEM source file format types
…ss strict about how it expects the incoming file to be formatted
… and not samples, to index the visible portion of the waveform for use in determining the local max amplitude within the time window. This would have led to incorrectly scaled waveforms when using the option 'xlim_s'. This bugfix sets the correct index unit, and ensures that all indices coming out of getter function 'get_xlim' are integers so that they directly be used to index waveform data
Accommodating parameter name change from 'cmtsolution' to 'source' in the docs to match recent update in #124
…n be used in parameter file
…ow user to determine which files are read in
…xplicitely provided
…onfig writing function, remade the template config, added new test to check the example config files are still in order and removed some unncessary parameters from example configs
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Changelog
(In chronological order)
obspy.core.event.Eventobjects, rather than the makeshift Source objectsand SPECFEM3D_GLOBE
read_events_plusthat provides additional support toObspys
read_eventsfunction by allowing for support of FORCESOLUTION andSOURCE files from SPECFEM2D/3D/3D_GLOBE
Sourceclass fromPysep.utils.io.mt. This was a remnant of theold Pyatoa approach to building an Obspy Event-like object to mimic certain
behaviors. This has been replaced by read functions which simply return Events
which would cause preprocessing to fail
standst_synare providedpyproject.toml, otherlocations now reference this file to determine version number
cmtsolutionhas been renamed tosource.--syn_path.
RecordSection.read_data()function which handles data reading logicand can read both obs data (.SAC from PySEP) and syn data
(SPECFEM ASCII files or SAC files)
data is available
sourcefile formats. New parameter'srcfmt' allows User to set this manually. If not given, RecSec will attempt
to guess the file format based on the name of the file.
read_specfem3d_cmtsolution_cartesianwas unable to handleFlinn-Engdahl regions that had spaces in them. Also it was unable to
handle extra lines in the file.
_legacy_naming-> 'legacy_naming`wildcardandsyn_wildcardto specify how tosearch for data to plot with RecSec
Pysep.write_config