Supplementary code for Chapter 2 (A cell-based model for ionic electrodiffusion in excitable tissue) in EMI: CELL BASED MATHEMATICAL MODEL OF EXCITABLE CELLS that reproduces Figure 2.1 and 2.2.
Get the environment needed (all dependencies etc.), build and and run the Docker container ceciledc/fenics_mixed_dimensional:13-03-20 by:
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Installing docker: https://docs.docker.com/engine/installation/
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Build and start docker container with:
docker run -t -v $(pwd):/home/fenics -i ceciledc/fenics_mixed_dimensional:13-03-20
To run the code and reproduce the results, execute:
python main.py
The software is free: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
Contact [email protected] for questions or to report issues with the software.