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achael · Jun 25, 2024 · 7b922d9 · 7b922d9
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diff --git a/_modules/ehtim/array.html b/_modules/ehtim/array.html
@@ -277,12 +277,15 @@ <h1>Source code for ehtim.array</h1><div class="highlight"><pre>
 <span class="sd">               matplotlib.axes</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="c1"># sites</span>
-        <span class="k">if</span> <span class="n">sites</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;all&#39;</span> <span class="ow">or</span> <span class="s1">&#39;All&#39;</span><span class="p">]</span> <span class="ow">or</span> <span class="n">sites</span> <span class="o">==</span> <span class="p">[]:</span>
+        <span class="k">if</span> <span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">sites</span><span class="p">,</span><span class="nb">str</span><span class="p">)</span> <span class="ow">and</span> <span class="n">sites</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="o">==</span> <span class="s1">&#39;all&#39;</span><span class="p">):</span>
             <span class="n">sites</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">tkey</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
 
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">sites</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">sites</span><span class="p">,</span><span class="nb">str</span><span class="p">):</span>
             <span class="n">sites</span> <span class="o">=</span> <span class="p">[</span><span class="n">sites</span><span class="p">]</span>
 
+        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">sites</span><span class="p">)</span><span class="o">==</span><span class="mi">0</span><span class="p">:</span>
+            <span class="n">sites</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">tkey</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
+
         <span class="n">keys</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">tkey</span><span class="p">[</span><span class="n">site</span><span class="p">]</span> <span class="k">for</span> <span class="n">site</span> <span class="ow">in</span> <span class="n">sites</span><span class="p">]</span>
 
         <span class="n">axes</span> <span class="o">=</span> <span class="n">plot_tarr_dterms</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">tarr</span><span class="p">,</span> <span class="n">keys</span><span class="o">=</span><span class="n">keys</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="n">label</span><span class="p">,</span> <span class="n">legend</span><span class="o">=</span><span class="n">legend</span><span class="p">,</span> <span class="n">clist</span><span class="o">=</span><span class="n">clist</span><span class="p">,</span>

diff --git a/_modules/ehtim/calibrating/network_cal.html b/_modules/ehtim/calibrating/network_cal.html
@@ -207,8 +207,8 @@ <h1>Source code for ehtim.calibrating.network_cal</h1><div class="highlight"><pr
                                                               <span class="n">zbl</span><span class="p">,</span> <span class="n">sites</span><span class="p">,</span> <span class="n">cluster_data</span><span class="p">,</span> <span class="n">obs</span><span class="o">.</span><span class="n">polrep</span><span class="p">,</span> <span class="n">pol</span><span class="p">,</span>
                                                               <span class="n">method</span><span class="p">,</span> <span class="n">pad_amp</span><span class="p">,</span> <span class="n">gain_tol</span><span class="p">,</span>
                                                               <span class="n">caltable</span><span class="p">,</span> <span class="n">show_solution</span><span class="p">,</span> <span class="n">debias</span><span class="p">,</span> <span class="n">msgtype</span>
-                                                             <span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">scans</span><span class="p">))]),</span>
-                                                             <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
+                                                             <span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">scans</span><span class="p">))]))</span>
+                                                             <span class="c1">#dtype=object)</span>
     <span class="k">else</span><span class="p">:</span>  <span class="c1"># without multiprocessing</span>
         <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">scans</span><span class="p">)):</span>
             <span class="n">obsh</span><span class="o">.</span><span class="n">prog_msg</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="nb">len</span><span class="p">(</span><span class="n">scans</span><span class="p">),</span> <span class="n">msgtype</span><span class="o">=</span><span class="n">msgtype</span><span class="p">,</span> <span class="n">nscan_last</span><span class="o">=</span><span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">)</span>

diff --git a/_modules/ehtim/calibrating/self_cal.html b/_modules/ehtim/calibrating/self_cal.html
@@ -244,8 +244,8 @@ <h1>Source code for ehtim.calibrating.self_cal</h1><div class="highlight"><pre>
                                                               <span class="n">show_solution</span><span class="p">,</span> <span class="n">pad_amp</span><span class="p">,</span> <span class="n">gain_tol</span><span class="p">,</span>
                                                               <span class="n">debias</span><span class="p">,</span> <span class="n">caltable</span><span class="p">,</span> <span class="n">msgtype</span><span class="p">,</span>
                                                               <span class="n">use_grad</span>
-                                                              <span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">scans</span><span class="p">))]),</span>
-                                                              <span class="n">dtype</span><span class="o">=</span><span class="nb">object</span><span class="p">)</span>
+                                                              <span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">scans</span><span class="p">))]))</span>
+                                                              <span class="c1">#dtype=object)</span>
 
     <span class="k">else</span><span class="p">:</span>  <span class="c1"># run on a single core</span>
         <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">scans</span><span class="p">)):</span>

diff --git a/_modules/ehtim/caltable.html b/_modules/ehtim/caltable.html
@@ -212,12 +212,15 @@ <h1>Source code for ehtim.caltable</h1><div class="highlight"><pre>
 <span class="sd">               matplotlib.axes</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="c1"># sites</span>
-        <span class="k">if</span> <span class="n">sites</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;all&#39;</span> <span class="ow">or</span> <span class="s1">&#39;All&#39;</span><span class="p">]</span> <span class="ow">or</span> <span class="n">sites</span> <span class="o">==</span> <span class="p">[]:</span>
+        <span class="k">if</span> <span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">sites</span><span class="p">,</span><span class="nb">str</span><span class="p">)</span> <span class="ow">and</span> <span class="n">sites</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="o">==</span> <span class="s1">&#39;all&#39;</span><span class="p">):</span>
             <span class="n">sites</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">data</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
 
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">sites</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">sites</span><span class="p">,</span><span class="nb">str</span><span class="p">):</span>
             <span class="n">sites</span> <span class="o">=</span> <span class="p">[</span><span class="n">sites</span><span class="p">]</span>
-
+
+        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">sites</span><span class="p">)</span><span class="o">==</span><span class="mi">0</span><span class="p">:</span>
+            <span class="n">sites</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">data</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
+
         <span class="n">keys</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">tkey</span><span class="p">[</span><span class="n">site</span><span class="p">]</span> <span class="k">for</span> <span class="n">site</span> <span class="ow">in</span> <span class="n">sites</span><span class="p">]</span>
 
         <span class="n">axes</span> <span class="o">=</span> <span class="n">plot_tarr_dterms</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">tarr</span><span class="p">,</span> <span class="n">keys</span><span class="o">=</span><span class="n">keys</span><span class="p">,</span> <span class="n">label</span><span class="o">=</span><span class="n">label</span><span class="p">,</span> <span class="n">legend</span><span class="o">=</span><span class="n">legend</span><span class="p">,</span> <span class="n">clist</span><span class="o">=</span><span class="n">clist</span><span class="p">,</span>
@@ -280,12 +283,15 @@ <h1>Source code for ehtim.caltable</h1><div class="highlight"><pre>
             <span class="n">x</span> <span class="o">=</span> <span class="n">fig</span><span class="o">.</span><span class="n">add_subplot</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span>
 
         <span class="c1"># sites</span>
-        <span class="k">if</span> <span class="n">sites</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;all&#39;</span> <span class="ow">or</span> <span class="s1">&#39;All&#39;</span><span class="p">]</span> <span class="ow">or</span> <span class="n">sites</span> <span class="o">==</span> <span class="p">[]:</span>
+        <span class="k">if</span> <span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">sites</span><span class="p">,</span><span class="nb">str</span><span class="p">)</span> <span class="ow">and</span> <span class="n">sites</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="o">==</span> <span class="s1">&#39;all&#39;</span><span class="p">):</span>
             <span class="n">sites</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">data</span><span class="o">.</span><span class="n">keys</span><span class="p">()))</span>
 
-        <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">sites</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">sites</span><span class="p">,</span><span class="nb">str</span><span class="p">):</span>
             <span class="n">sites</span> <span class="o">=</span> <span class="p">[</span><span class="n">sites</span><span class="p">]</span>
 
+        <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">sites</span><span class="p">)</span><span class="o">==</span><span class="mi">0</span><span class="p">:</span>
+            <span class="n">sites</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">data</span><span class="o">.</span><span class="n">keys</span><span class="p">()))</span>       
+
         <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">markersize</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
             <span class="n">markersize</span> <span class="o">=</span> <span class="n">markersize</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">ones</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">sites</span><span class="p">))</span>
 
@@ -1015,12 +1021,15 @@ <h1>Source code for ehtim.caltable</h1><div class="highlight"><pre>
         <span class="n">caltab2</span> <span class="o">=</span> <span class="n">caltab2</span><span class="o">.</span><span class="n">scan_avg</span><span class="p">(</span><span class="n">obs</span><span class="p">,</span> <span class="n">incoherent</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
 
     <span class="c1"># sites</span>
-    <span class="k">if</span> <span class="n">sites</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">&#39;all&#39;</span> <span class="ow">or</span> <span class="s1">&#39;All&#39;</span><span class="p">]</span> <span class="ow">or</span> <span class="n">sites</span> <span class="o">==</span> <span class="p">[]:</span>
+    <span class="k">if</span> <span class="p">(</span><span class="nb">isinstance</span><span class="p">(</span><span class="n">sites</span><span class="p">,</span><span class="nb">str</span><span class="p">)</span> <span class="ow">and</span> <span class="n">sites</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="o">==</span> <span class="s1">&#39;all&#39;</span><span class="p">):</span>
         <span class="n">sites</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">caltab1</span><span class="o">.</span><span class="n">data</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span><span class="o">.</span><span class="n">intersection</span><span class="p">(</span><span class="n">caltab2</span><span class="o">.</span><span class="n">data</span><span class="o">.</span><span class="n">keys</span><span class="p">()))</span>
 
-    <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">sites</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
+    <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">sites</span><span class="p">,</span><span class="nb">str</span><span class="p">):</span>
         <span class="n">sites</span> <span class="o">=</span> <span class="p">[</span><span class="n">sites</span><span class="p">]</span>
 
+    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">sites</span><span class="p">)</span><span class="o">==</span><span class="mi">0</span><span class="p">:</span>
+        <span class="n">sites</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">set</span><span class="p">(</span><span class="n">caltab1</span><span class="o">.</span><span class="n">data</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span><span class="o">.</span><span class="n">intersection</span><span class="p">(</span><span class="n">caltab2</span><span class="o">.</span><span class="n">data</span><span class="o">.</span><span class="n">keys</span><span class="p">()))</span>
+
     <span class="k">if</span> <span class="n">site_name_dict</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
         <span class="nb">print</span><span class="p">(</span><span class="s1">&#39;hi&#39;</span><span class="p">)</span>
         <span class="n">site_name_dict</span> <span class="o">=</span> <span class="p">{}</span>