Fix for annotation SQL update #739
Workflow file for this run
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| name: 'Build, test and deploy OpenAtlas' | |
| on: | |
| push: {} | |
| workflow_call: {} | |
| repository_dispatch: | |
| types: [run] | |
| inputs: | |
| debug_enabled: | |
| type: boolean | |
| description: 'Run the build with tmate debugging enabled (https://github.com/marketplace/actions/debugging-with-tmate)' | |
| required: false | |
| default: false | |
| workflow_dispatch: | |
| inputs: | |
| debug_enabled: | |
| type: boolean | |
| description: 'Run the build with tmate debugging enabled (https://github.com/marketplace/actions/debugging-with-tmate)' | |
| required: false | |
| default: false | |
| jobs: | |
| setup_workflow_env: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| environment: ${{ steps.get_environment_from_git_ref.outputs.environment }} | |
| environment_short: ${{ steps.get_environment_from_git_ref.outputs.environment_short }} | |
| image_name: container-preview | |
| registry_root: ghcr.io/${{ github.repository }}/ | |
| default_port: "5000" | |
| APP_NAME: OpenAtlas | |
| APP_ROOT: "/" | |
| steps: | |
| - name: Get environment from git ref | |
| id: get_environment_from_git_ref | |
| run: | | |
| echo "Running on branch ${{ github.ref_name }}" | |
| if [ "${{ github.ref }}" = "refs/heads/main" ]; then | |
| echo "environment=production" | |
| echo "environment=production" >> $GITHUB_OUTPUT | |
| echo "environment_short=prod" >> $GITHUB_OUTPUT | |
| else | |
| echo "environment=review/${{ github.ref_name }}" | |
| echo "environment=review/${{ github.ref_name }}" >> $GITHUB_OUTPUT | |
| echo "environment_short=$(echo -n ${{ github.ref_name }} | sed s/feature_// | tr '_' '-' | tr '[:upper:]' '[:lower:]' )" >> $GITHUB_OUTPUT | |
| fi | |
| build_openatlas: | |
| needs: [setup_workflow_env] | |
| environment: ${{ needs.setup_workflow_env.outputs.environment }} | |
| permissions: | |
| packages: write | |
| contents: read | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Create tags based on git data | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: | | |
| ${{ needs.setup_workflow_env.outputs.registry_root }}${{ needs.setup_workflow_env.outputs.image_name }} | |
| tags: | | |
| type=ref,event=branch | |
| type=ref,event=pr | |
| type=semver,pattern={{version}} | |
| type=semver,pattern={{major}}.{{minor}} | |
| type=raw,value=latest,enable={{is_default_branch}} | |
| type=raw,value={{sha}} | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Build and push | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| file: install/docker/Dockerfile | |
| platforms: linux/amd64 | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| cache-from: type=gha | |
| cache-to: type=gha,mode=max | |
| test_openatlas: | |
| env: | |
| POSTGRES_PASSWORD: verysecret | |
| POSTGRES_DB: openatlas_test | |
| POSTGRES_USER: openatlas | |
| runs-on: ubuntu-latest | |
| needs: [setup_workflow_env, build_openatlas] | |
| environment: ${{ needs.setup_workflow_env.outputs.environment }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Fetch container image built above | |
| run: | | |
| container_name_tag="$(echo -n '${{ needs.setup_workflow_env.outputs.registry_root }}${{ needs.setup_workflow_env.outputs.image_name }}' | tr '_' '-' | tr '[:upper:]' '[:lower:]'):$(git rev-parse --short HEAD)" | |
| docker pull $container_name_tag | |
| docker tag $container_name_tag openatlas-openatlas | |
| docker tag $container_name_tag openatlas-openatlas | |
| docker tag $container_name_tag openatlas-initdb | |
| - name: Docker compose | |
| run: | | |
| docker compose up --detach | |
| - name: Docker service overview | |
| run: | | |
| docker ps | |
| docker network ls | |
| - name: File folders ownership | |
| run: | | |
| ls -la | |
| sudo chown -R 33:33 ./files/uploads | |
| sudo chown -R 33:33 ./files/processed_images/resized | |
| sudo chown -R 33:33 ./files/export | |
| - name: Write testing.py | |
| run: | | |
| set -x | |
| cat <<EOF > testing.py | |
| SERVER_NAME='local.host' | |
| DATABASE_NAME='${{env.POSTGRES_DB}}' | |
| DATABASE_USER='openatlas' | |
| DATABASE_HOST='postgres' | |
| DATABASE_PORT=5432 | |
| DATABASE_PASS='${{env.POSTGRES_PASSWORD}}' | |
| MAIL_PASSWORD='asdQWEtzu123' | |
| SECRET_KEY='$(< /dev/urandom tr -dc _A-Z-a-z-0-9 | head -c 32;echo;)' # Used for cookies | |
| DEBUG = True | |
| WTF_CSRF_ENABLED = False | |
| WTF_CSRF_METHODS: list[str] = [] | |
| ARCHE = { | |
| 'id': 0, | |
| 'url': 'https://arche-curation.acdh-dev.oeaw.ac.at/'} | |
| IIIF = { | |
| 'enabled': True, | |
| 'path': '/var/www/iipsrv/', | |
| 'url': 'http://localhost:8080/iiif/', | |
| 'version': 2, | |
| 'conversion': True, | |
| 'compression': 'jpeg'} | |
| EOF | |
| sudo chown 33:33 testing.py | |
| docker cp -a testing.py openatlas-openatlas-1:/var/www/openatlas/instance/ | |
| docker exec -i openatlas-openatlas-1 /bin/bash -c "cd /var/www/openatlas/install/ && sed -i 's@http://localhost/iiif/@http://localhost:8080/iiif/@g' data_test.sql" | |
| docker exec -i openatlas-openatlas-1 /bin/bash -c "cd /var/www/openatlas/instance/ && ls -la && cat testing.py && cat production.py" | |
| - name: Setup tmate session | |
| uses: mxschmitt/action-tmate@v3 | |
| if: ${{ github.event_name == 'workflow_dispatch' && inputs.debug_enabled }} | |
| with: | |
| detached: true | |
| - name: Run tests | |
| run: | | |
| (docker exec -i openatlas-openatlas-1 /bin/bash -c "(cd /var/www/openatlas/tests && nosetests3 --verbosity=2 --nologcapture --nocapture) || (echo Tests exited with $?; exit 1)") ||\ | |
| (echo Retry; docker exec -i openatlas-openatlas-1 /bin/bash -c "(cd /var/www/openatlas/tests && nosetests3 --verbosity=2 --nologcapture --nocapture)") | |
| _3: | |
| needs: [setup_workflow_env, test_openatlas] | |
| uses: acdh-oeaw/gl-autodevops-minimal-port/.github/workflows/deploy.yml@main | |
| secrets: inherit | |
| if: contains(github.ref, 'tags') != true && github.repository_owner == 'acdh-oeaw' | |
| with: | |
| environment: ${{ needs.setup_workflow_env.outputs.environment}} | |
| DOCKER_TAG: ${{ needs.setup_workflow_env.outputs.registry_root }}${{ needs.setup_workflow_env.outputs.image_name }} | |
| APP_NAME: ${{ needs.setup_workflow_env.outputs.APP_NAME }}-${{ needs.setup_workflow_env.outputs.environment_short }} | |
| APP_ROOT: ${{ needs.setup_workflow_env.outputs.APP_ROOT }} | |
| default_port: ${{ needs.setup_workflow_env.outputs.default_port}} | |
| with_db_demo_deploy: | |
| needs: [setup_workflow_env, test_openatlas] | |
| uses: acdh-oeaw/gl-autodevops-minimal-port/.github/workflows/deploy.yml@main | |
| secrets: inherit | |
| if: contains(github.ref, 'tags') != true && github.repository_owner == 'acdh-oeaw' | |
| with: | |
| environment: review/with_db_demo_deploy | |
| do_deploy: ${{ needs.setup_workflow_env.outputs.environment == 'review/develop' }} | |
| DOCKER_TAG: ${{ needs.setup_workflow_env.outputs.registry_root }}${{ needs.setup_workflow_env.outputs.image_name }} | |
| APP_NAME: ${{ needs.setup_workflow_env.outputs.APP_NAME }}-with_db_demo_deploy | |
| APP_ROOT: ${{ needs.setup_workflow_env.outputs.APP_ROOT }} | |
| default_port: ${{ needs.setup_workflow_env.outputs.default_port}} | |
| openatlas_demo: | |
| needs: [setup_workflow_env, test_openatlas] | |
| uses: acdh-oeaw/gl-autodevops-minimal-port/.github/workflows/deploy.yml@main | |
| secrets: inherit | |
| if: contains(github.ref, 'tags') != true && github.repository_owner == 'acdh-oeaw' | |
| with: | |
| environment: openatlas-demo | |
| do_deploy: ${{ needs.setup_workflow_env.outputs.environment == 'review/develop' }} | |
| DOCKER_TAG: ${{ needs.setup_workflow_env.outputs.registry_root }}${{ needs.setup_workflow_env.outputs.image_name }} | |
| APP_NAME: ${{ needs.setup_workflow_env.outputs.APP_NAME }}-openatlas-demo | |
| APP_ROOT: ${{ needs.setup_workflow_env.outputs.APP_ROOT }} | |
| default_port: ${{ needs.setup_workflow_env.outputs.default_port}} |