Misc fixes

ext/src/hmmer/src/p7_pipeline.c

@@ -711,7 +711,9 @@ p7_Pipeline(P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, cons
   int              status;
 
   if (sq->n == 0) return eslOK;    /* silently skip length 0 seqs; they'd cause us all sorts of weird problems */
+#if 0 // SPADES_LOCAL: disable
   if (sq->n > 100000) ESL_EXCEPTION(eslETYPE, "Target sequence length > 100K, over comparison pipeline limit.\n(Did you mean to use nhmmer/nhmmscan?)");
+#endif
 
   p7_omx_GrowTo(pli->oxf, om->M, 0, sq->n);    /* expand the one-row omx if needed */
 

ext/src/lexy/include/lexy/input_location.hpp

@@ -180,7 +180,7 @@ class input_location
     {
         if (lhs._line_nr != rhs._line_nr)
             return lhs._line_nr < rhs._line_nr;
-        return lhs._column_nr < rhs._colum_nr;
+        return lhs._column_nr < rhs._column_nr;
     }
     friend constexpr bool operator<=(const input_location& lhs, const input_location& rhs)
     {

src/common/adt/flat_map.hpp

@@ -180,7 +180,7 @@ struct flat_map {
     }
 
     void swap(flat_map &other) {
-        data_.swap(other.data);
+        data_.swap(other.data_);
     }
 
     void clear() {

src/common/adt/flat_set.hpp

@@ -131,7 +131,7 @@ struct flat_set {
         return data_.erase(iterator_const_cast(first), iterator_const_cast(last));
     }
 
-    void swap(flat_set &other) { data_.swap(other.data); }
+    void swap(flat_set &other) { data_.swap(other.data_); }
 
     void clear() { data_.clear(); }
 

src/common/kmer_index/ph_map/key_with_hash.hpp

@@ -62,7 +62,7 @@ class SimpleKeyWithHash {
     bool operator==(const SimpleKeyWithHash &that) const {
         VERIFY_DEV(&this->hash_ == &that.hash_);
         if (this->ready_ && that.ready_)
-            return this->idx_ == that.idx_ && this->is_minimal_ == that.is_minimal_;
+            return this->idx_ == that.idx_;
         return this->key_ == that.key_;
     }