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Print extra unknowns in case of --continue #1311

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merged 1 commit into from
May 31, 2024
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Print extra unknowns in case of --continue #1311

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3 changes: 2 additions & 1 deletion src/projects/spades/pipeline/spades_pipeline/options_parser.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1045,7 +1045,8 @@ def postprocessing(args, cfg, dataset_data, log, spades_home, load_processed_dat
if unknown_args:
support.error("you cannot specify any option except -o with --continue option! "
"Please use '--restart-from last' if you need to change some "
"of the options from the initial run and continue from the last available checkpoint.", log)
"of the options from the initial run and continue from the last available checkpoint.\n"
"Extra options: %s" % unknown_args, log)
if args.meta:
if args.careful or args.mismatch_corrector or (args.cov_cutoff != "off" and args.cov_cutoff is not None):
support.error("you cannot specify --careful, --mismatch-correction or --cov-cutoff in metagenomic mode!",
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