Better job names

ablab · Sep 21, 2024 · fcf0c5c · fcf0c5c
1 parent fcaca11
commit fcf0c5c
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/src/projects/spades/pipeline/spades_pipeline/commands_parser.py b/src/projects/spades/pipeline/spades_pipeline/commands_parser.py
@@ -77,7 +77,8 @@ def to_dict(self):
                 "del_after": self.del_after}
 
     def generate_job_uuid(self):
-        return self.STAGE.replace(' ', '_') + "_" + \
+        return ('hpcSPAdes_' if self.mpi_support else 'SPAdes_') + \
+            self.STAGE.replace(' ', '_') + "_" + \
                ''.join([random.choice(string.ascii_uppercase + string.digits) for k in range(32)])
 
 

diff --git a/src/projects/spades/pipeline/spades_pipeline/executors/executor_slurm.py b/src/projects/spades/pipeline/spades_pipeline/executors/executor_slurm.py
@@ -53,7 +53,7 @@ def get_MPI_sh_preambula(self):
         return preambula
 
     def get_sh_command(self, command, prev_id, mpi):
-        cmd_str = "#=== STAGE " + command.STAGE + ("(MPI) ===\n" if mpi else "(not MPI) ===\n")
+        cmd_str = "#=== STAGE " + command.STAGE + (" (MPI) ===\n" if mpi else " (not MPI) ===\n")
         cmd_str += "CMD=\"" + command.mpi_sh_str() + "\"\n"
         cmd_str += "SID1=$(" + self.grid_engine_submit_command + " $SLURM_ARGS " + \
                    self.grid_engine_job_name.format(JOB_NAME=command.job_uuid)  + " $LOG_OUT $ERR_OUT "