Change import to importFrom except dplyr

NAMESPACE

@@ -15,8 +15,6 @@ export(x3p_boundary_points)
 export(x3p_image_autosize)
 export(x3p_surface_polygon)
 import(dplyr)
-import(ggplot2)
-import(x3ptools)
 importFrom(Cairo,CairoPNG)
 importFrom(assertthat,assert_that)
 importFrom(assertthat,not_empty)
@@ -31,6 +29,17 @@ importFrom(dplyr,n)
 importFrom(dplyr,rename)
 importFrom(dplyr,select)
 importFrom(dplyr,summarize)
+importFrom(ggplot2,geom_histogram)
+importFrom(ggplot2,geom_line)
+importFrom(ggplot2,geom_point)
+importFrom(ggplot2,geom_raster)
+importFrom(ggplot2,geom_smooth)
+importFrom(ggplot2,ggplot)
+importFrom(ggplot2,ggsave)
+importFrom(ggplot2,ggtitle)
+importFrom(ggplot2,labs)
+importFrom(ggplot2,scale_fill_gradient2)
+importFrom(ggplot2,xlab)
 importFrom(grDevices,as.raster)
 importFrom(grDevices,dev.off)
 importFrom(graphics,par)
@@ -71,8 +80,14 @@ importFrom(tidyr,nest)
 importFrom(tidyr,pivot_longer)
 importFrom(tidyr,unnest)
 importFrom(wires,x3p_surface_polygon)
+importFrom(x3ptools,df_to_x3p)
 importFrom(x3ptools,x3p_add_mask)
+importFrom(x3ptools,x3p_average)
+importFrom(x3ptools,x3p_bin_stripes)
+importFrom(x3ptools,x3p_delete_mask)
+importFrom(x3ptools,x3p_extract)
 importFrom(x3ptools,x3p_get_scale)
 importFrom(x3ptools,x3p_image)
+importFrom(x3ptools,x3p_rotate)
 importFrom(x3ptools,x3p_sample)
 importFrom(x3ptools,x3p_to_df)

R/get_sig_MSE.R

@@ -5,7 +5,9 @@
 #' @param method choice of \code{median} or \code{mean} when computing the summary statistics
 #' @param ifplot whether graphs are displayed
 #' @param delta shifting range when minimizing MSE
-#' @import dplyr x3ptools ggplot2
+#' @import dplyr
+#' @importFrom x3ptools x3p_to_df x3p_delete_mask x3p_bin_stripes
+#' @importFrom ggplot2 ggplot geom_line geom_point
 #' @importFrom stats na.omit median lm coef approx
 #' @importFrom purrr map_dbl map set_names
 #' @importFrom tidyr nest unnest

R/get_sig_raw.R

@@ -4,7 +4,9 @@
 #' @param x3p x3p object
 #' @param method choice of \code{median} or \code{mean} when computing the summary statistics
 #' @param ifplot whether graphs are displayed
-#' @import dplyr x3ptools ggplot2
+#' @import dplyr
+#' @importFrom x3ptools x3p_to_df
+#' @importFrom ggplot2 ggplot geom_line
 #' @importFrom stats na.omit median
 #' @export
 

R/get_sigalign.R

@@ -9,7 +9,7 @@
 #' @param name2 name for the second cut
 #' @param legendname legend name
 #' @param titlename title name
-#' @import ggplot2
+#' @importFrom ggplot2 ggplot geom_line labs xlab ggtitle
 #' @importFrom bulletxtrctr sig_align
 #' @export
 

R/get_x3p_bin_rotate.R

@@ -8,7 +8,8 @@
 #' @param min_score_cut the tuning parameter for minimum scores required in hough transformation
 #' @param ifplot whether graphs are displayed
 #' @param loess_span the parameter which controls the degree of smoothing, only available when \code{method = MLE}
-#' @import dplyr x3ptools
+#' @import dplyr
+#' @importFrom x3ptools x3p_bin_stripes x3p_extract x3p_rotate
 #' @export
 
 get_x3p_bin_rotate <- function(x3p_inner_impute, freqs = c(0, 0.3, 0.7, 1),

R/get_x3p_inner_df.R

@@ -4,7 +4,8 @@
 #' @param x3p x3p object
 #' @param mask_col colour for the polygon
 #' @param concavity strictly positive value used in \code{concaveman::concaveman}
-#' @import dplyr x3ptools
+#' @import dplyr
+#' @importFrom x3ptools x3p_extract x3p_average x3p_to_df
 #' @importFrom tidyr pivot_longer
 #' @importFrom stats sd
 #' @importFrom raster raster adjacent ncell

R/get_x3p_inner_impute.R

@@ -7,7 +7,9 @@
 #' @param ifsave whether the imputation procedure gif is going to be saved
 #' @param dir_name required when \code{ifsave} is \code{TRUE}
 #' @param ifplot whether graphs are displayed
-#' @import dplyr x3ptools ggplot2
+#' @import dplyr
+#' @importFrom x3ptools x3p_delete_mask x3p_extract x3p_average x3p_add_mask
+#' @importFrom ggplot2 ggplot geom_raster scale_fill_gradient2 labs ggsave
 #' @importFrom assertthat assert_that not_empty
 #' @importFrom raster raster focal as.data.frame as.matrix
 #' @importFrom purrr map

R/get_x3p_inner_nomiss_res.R

@@ -4,7 +4,8 @@
 #' @param x3p x3p object
 #' @param mask_col colour for the polygon
 #' @param concavity strictly positive value used in \code{concaveman::concaveman}
-#' @import dplyr x3ptools
+#' @import dplyr
+#' @importFrom x3ptools df_to_x3p
 #' @importFrom stats lm predict
 #' @export
 

R/get_x3p_rotate_angle_MLE.R

@@ -6,7 +6,8 @@
 #' @param min_score_cut the tuning parameter for minimum scores required in hough transformation
 #' @param ifplot whether graphs are displayed
 #' @param loess_span the parameter which controls the degree of smoothing
-#' @import dplyr ggplot2
+#' @import dplyr
+#' @importFrom ggplot2 ggplot geom_histogram geom_point geom_smooth
 #' @importFrom raster raster
 #' @importFrom imager as.cimg hough_line nfline
 #' @importFrom stats loess predict

R/get_x3p_rotate_angle_quantile.R

@@ -5,7 +5,8 @@
 #' @param ntheta number of bins along theta used in \code{imager::hough_line}
 #' @param min_score_cut the tuning parameter for minimum scores required in hough transformation
 #' @param ifplot whether graphs are displayed
-#' @import dplyr ggplot2
+#' @import dplyr
+#' @importFrom ggplot2 ggplot geom_histogram geom_point
 #' @importFrom raster raster
 #' @importFrom imager as.cimg hough_line nfline
 #' @importFrom stats quantile median