v0.2.3 (November 17th, 2014)
Pre-release
Pre-release
This is a patch release, with non-breaking changes from v0.2.2.
Compute functions
- Restore
Study.detect_outliers
Study.interactive_choose_outliers
andStudy.interactive_reset_outliers
Plotting functions
- Add
Study
-level NMF space transitions/positions
Bug Fixes
embark
wouldn't work ifmetadata
didn't have apooled
column,
now it doesBaseData.drop_outliers
would actually drop samples from the data,
but we never want to remove data, only mark it as something to be removed so
all the original data is there- For all
compute
submodules, add a check to make sure the input
data is truly a probability distribution (non-negative, sums to 1) BaseData.plot_feature
now plots all features with the same name
(e.g. all splicing events within that gene) onto a singlefig
object
Documentation
- Restore some lost documentation on :py:class:
.BaseData
and
:py:class:.Study
Other
- Rename modalities that couldn't be assigned when
bootstrapped=True
in
compute.splicing.Modalities
, from "unassigned" to "ambiguous"