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multimapping shapes #158

Merged
merged 8 commits into from
Dec 17, 2024
Merged

multimapping shapes #158

merged 8 commits into from
Dec 17, 2024

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ckmah
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@ckmah ckmah commented Oct 3, 2024 •
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Shapes are currently mapped "1 to 1" with _sjoin_shapes() and multiple shapes e.g. nuclei assigned to the same cell shape are dropped and only one is kept. The goal is to support "1 to many" mappings for cells. Some use cases include complex organelles like the ER, golgi, or those with multiple instances in the same cell e.g. condensates, granules, vesicles, or just arbitrary domains. #157

  • more robust shape indices

@ckmah ckmah linked an issue Oct 3, 2024 that may be closed by this pull request
multimapped shapes #157
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This was linked to issues Oct 15, 2024
max_coordinate_system in bounding_box_query #160
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bt.io.prep(sdata) error: operands could not be broadcast together with shapes (2,) (3,) #161
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@notion-workspace Notion Workspace
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Multimapped Shapes

@ckmah ckmah changed the base branch from master to v2.1.4 December 17, 2024 23:56
@ckmah ckmah merged commit 1046e01 into v2.1.4 Dec 17, 2024
@ckmah ckmah mentioned this pull request Dec 18, 2024
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