v2.1.1

[ckmah]

Improve robustness and runtime performance after initial SpatialData refactor.

Stability

• parallelize compute intensive methods
  • bt.tl.flux()
  • bt.tl.analyze_points()
• re-add test code coverage enable codecov #126
• downsize test data to speedup tests
• improve test coverage

Bugs

• Import Error.  #127 remove python=3.10 specific syntax to maintain compat. w/ 3.9
• bento.tl.lp() fails if cells are missing nuclei #125

[notion-workspace]

Bento v2.1.1

[codecov]

Codecov Report

Attention: Patch coverage is 29.39815% with 305 lines in your changes missing coverage. Please review.

Project coverage is 23.71%. Comparing base (ed851d1) to head (8237e35).
Report is 172 commits behind head on master.

❗ Current head 8237e35 differs from pull request most recent head b664b70

Please upload reports for the commit b664b70 to get more accurate results.

Files	Patch %	Lines
tests/test_ut.py	10.00%	54 Missing ⚠️
bento/tools/_flux.py	10.52%	34 Missing ⚠️
tests/test_flux.py	21.05%	30 Missing ⚠️
bento/plotting/_plotting.py	30.00%	28 Missing ⚠️
bento/tools/_point_features.py	22.22%	21 Missing ⚠️
tests/test_colocation.py	17.39%	19 Missing ⚠️
bento/_utils.py	6.25%	15 Missing ⚠️
tests/test_io.py	28.57%	15 Missing ⚠️
bento/tools/_lp.py	0.00%	14 Missing ⚠️
tests/test_shape_features.py	30.00%	14 Missing ⚠️
... and 11 more

Additional details and impacted files

@@             Coverage Diff             @@
##           master     #128       +/-   ##
===========================================
- Coverage   71.84%   23.71%   -48.14%     
===========================================
  Files          35       37        +2     
  Lines        2252     2218       -34     
===========================================
- Hits         1618      526     -1092     
- Misses        634     1692     +1058     

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