cosmx and xenium with vanilla flux analysis

YeoLab · May 3, 2024 · 66bf18f · 66bf18f
1 parent 68f5b75
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Showing 3 changed files with 476 additions and 46 deletions.
diff --git a/...e/tutorial_gallery/CosMx_conversion.ipynb → ...rce/tutorial_gallery/CosMx_Analysis.ipynb b/...e/tutorial_gallery/CosMx_conversion.ipynb → ...rce/tutorial_gallery/CosMx_Analysis.ipynb
diff --git a/docs/source/tutorial_gallery/Main_Guide.ipynb b/docs/source/tutorial_gallery/Main_Guide.ipynb
@@ -124,7 +124,7 @@
     {
      "data": {
       "application/vnd.jupyter.widget-view+json": {
-       "model_id": "07e391acfeda409f9e1f9f654da31165",
+       "model_id": "1d1b74cf6bdc41018fcba5c50cd099c0",
        "version_major": 2,
        "version_minor": 0
       },
@@ -630,27 +630,12 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 16,
+   "execution_count": 11,
    "id": "58cfd10c-79ab-4833-a87f-c2cfacd17037",
    "metadata": {
     "tags": []
    },
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "Crunching shape features...\n",
-      "Crunching point features...\n",
-      "Saving results...\n",
-      "Done.\n",
-      "Crunching shape features...\n",
-      "Crunching point features...\n",
-      "Saving results...\n",
-      "Done.\n"
-     ]
-    }
-   ],
+   "outputs": [],
    "source": [
     "bt.tl.lp(sdata)"
    ]

diff --git a/docs/source/tutorial_gallery/Xenium_Analysis.ipynb b/docs/source/tutorial_gallery/Xenium_Analysis.ipynb