fix sailor and bedgraph

YeoLab · Nov 26, 2024 · 18cd872 · 18cd872
1 parent c799b93
commit 18cd872
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/marine.py b/marine.py
@@ -434,11 +434,11 @@ def run(bam_filepath, annotation_bedfile_path, output_folder, contigs=[], strand
 
         if len(sailor_list) > 0:
             print("{} sites being converted to SAILOR format...".format(len(final_site_level_information_df)))
-            convert_sites_to_sailor(final_site_level_information_df, conversion_search, output_folder, skip_coverage)
+            convert_sites_to_sailor(final_site_level_information_df, sailor_list, output_folder, skip_coverage)
 
         if len(bedgraphs_list) > 0:
             # Make plot of edit distributions
-            generate_bedgraphs(final_site_level_information_df, conversion_search, output_folder)
+            generate_bedgraphs(final_site_level_information_df, bedgraphs_list, output_folder)
 
     if not annotation_bedfile_path:
         print("annotation_bedfile_path argument not provided ...\