Fix concatenation of coverage adatas #183
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name: integration_test_cli | |
on: | |
push: | |
branches: | |
- main | |
pull_request: | |
branches: | |
- main | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repo content | |
uses: actions/checkout@v2 | |
- name: Install Mamba | |
run: | | |
conda install -c conda-forge mamba=1.5.11 -y | |
- name: Print conda folder contents | |
run: | | |
ls /usr/share/miniconda/bin/ | |
ls /usr/share/miniconda/ | |
- name: Create Conda Environment | |
run: | | |
/usr/share/miniconda/bin/mamba create -n marine_environment python=3.8.18 -y | |
/usr/share/miniconda/bin/mamba env update -n marine_environment --file marine_environment2.yaml | |
- name: Print marine_environment bin folder contents | |
run: | | |
ls /usr/share/miniconda/envs/marine_environment/bin | |
- name: Execute Integration Tests | |
run: | | |
echo "running source" | |
source /home/runner/.bashrc | |
echo "running init" | |
conda init bash | |
CONDA_BASE=$(conda info --base) ; source $CONDA_BASE/etc/profile.d/conda.sh | |
echo "running activate" | |
conda activate marine_environment | |
which python | |
echo "creating marine base dir environment variable..." | |
export MARINE=$(pwd) | |
echo $MARINE | |
ls $MARINE | |
echo "Adding marine to path..." | |
export PATH=$PATH:$(pwd) | |
echo $PATH | |
echo "running test" | |
cd tests | |
pwd | |
bash integration_tests_run.sh /usr/share/miniconda/envs/marine_environment/bin/python |