fix lr test #155
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| name: integration_test_cli | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repo content | |
| uses: actions/checkout@v2 | |
| - name: Install Mamba | |
| run: | | |
| conda install -c conda-forge mamba=1.5.11 -y | |
| - name: Print conda folder contents | |
| run: | | |
| ls /usr/share/miniconda/bin/ | |
| ls /usr/share/miniconda/ | |
| - name: Create Conda Environment | |
| run: | | |
| /usr/share/miniconda/bin/mamba create -n marine_environment python=3.8.18 -y | |
| /usr/share/miniconda/bin/mamba env update -n marine_environment --file marine_environment2.yaml | |
| - name: Print marine_environment bin folder contents | |
| run: | | |
| ls /usr/share/miniconda/envs/marine_environment/bin | |
| - name: Execute Integration Tests | |
| run: | | |
| echo "running source" | |
| source /home/runner/.bashrc | |
| echo "running init" | |
| conda init bash | |
| CONDA_BASE=$(conda info --base) ; source $CONDA_BASE/etc/profile.d/conda.sh | |
| echo "running activate" | |
| conda activate marine_environment | |
| which python | |
| echo "creating marine base dir environment variable..." | |
| export MARINE=$(pwd) | |
| echo $MARINE | |
| ls $MARINE | |
| echo "Adding marine to path..." | |
| export PATH=$PATH:$(pwd) | |
| echo $PATH | |
| echo "running test" | |
| cd tests | |
| pwd | |
| bash integration_tests_run.sh /usr/share/miniconda/envs/marine_environment/bin/python |