Code for plotting arcs of various types
Copyright 2022 Anthony Mustoe
Contact: [email protected]
Can plot the following types of data
-Structures --ct (plot a single ct file) --refct (Compare ct to a reference ct and plot both)
-Pairing probability --pairprob (plot pairing probability from dotplot file)
-Rings --ringz (plot z-scores) --ringsig (plot correlation Chi2 significance)
-PAIR-MaP --pairmap (plot PAIR-MaP base pairs)
-Reactivity profiles --profile (plot normalized SHAPE reactivity data) --dmsprofile (plot normalized reactivity data colored to slightly different scale)
-RNAtools2 (https://github.com/Weeks-UNC/RNATools.git) -pmanalysis (included as part of this distribution)