80 refresh demo nb using actions (#91)

* Create nb_refresh.yml Initial commit. Workflow updates demo notebooks * Update nb_refresh.yml Update when to run Drop on push to this branch committer not author * Update documentation_test.yml Remove old branches * Update Notebook * Update nb_refresh.yml Committer didn't seem to show named bot as commit author, though email listed github-actions[bot]. Docs says to use author name and email (trying w/ default bot name and email this time). * Update Notebook --------- Co-authored-by: jbousquin <[email protected]> Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
USEPA · Aug 18, 2024 · dfbd3cb · dfbd3cb
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diff --git a/.github/workflows/documentation_test.yml b/.github/workflows/documentation_test.yml
@@ -6,7 +6,7 @@ on:
       [main]
   push:
     branches:
-      [main, dev, pyOpenSci-review]
+      [main, dev]
 
 # Allows you to run this workflow manually from the Actions tab
 #workflow_dispatch:

diff --git a/.github/workflows/nb_refresh.yml b/.github/workflows/nb_refresh.yml
@@ -0,0 +1,41 @@
+name: Update Notebook
+
+on:
+  pull_request:
+    branches:
+      [main]
+
+jobs:
+  notebook_update:
+
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout repo
+        uses: actions/checkout@v3
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: 3.x
+      - name: Update pip and install depends
+        run: |
+          python -VV
+          python -m pip install --upgrade pip
+          python -m pip install --no-deps .
+          pip install -r requirements.txt
+          pip install jupyter nbconvert nbformat
+      - name: Update analysis notebook
+        run: |
+          jupyter nbconvert --to notebook --execute demos/Harmonize_CapeCod_Detailed.ipynb --ExecutePreprocessor.kernel_name='python3' --output ../demos/Harmonize_CapeCod_Detailed
+          jupyter nbconvert --to notebook --execute demos/Harmonize_CapeCod_Simple.ipynb --ExecutePreprocessor.kernel_name='python3' --output ../demos/Harmonize_CapeCod_Simple
+          jupyter nbconvert --to notebook --execute demos/Harmonize_Pensacola_Detailed.ipynb --ExecutePreprocessor.kernel_name='python3' --output ../demos/Harmonize_Pensacola_Detailed
+          jupyter nbconvert --to notebook --execute demos/Harmonize_Pensacola_Simple.ipynb --ExecutePreprocessor.kernel_name='python3' --output ../demos/Harmonize_Pensacola_Simple
+          jupyter nbconvert --to notebook --execute demos/Harmonize_Tampa_Detailed.ipynb --ExecutePreprocessor.kernel_name='python3' --output ../demos/Harmonize_Tampa_Detailed
+          jupyter nbconvert --to notebook --execute demos/Harmonize_Tampa_Simple.ipynb --ExecutePreprocessor.kernel_name='python3' --output ../demos/Harmonize_Tampa_Simple
+      - name: commit updated notebook
+        uses: EndBug/add-and-commit@v7
+        with:
+          author_name: 'github-actions[bot]'
+          author_email: 'github-actions[bot]@users.noreply.github.com'
+          message: "Update Notebook"
+          add: '["demos/Harmonize_CapeCod_Detailed.ipynb", "demos/Harmonize_CapeCod_Simple.ipynb", "demos/Harmonize_Pensacola_Detailed.ipynb", "demos/Harmonize_Pensacola_Simple.ipynb", "demos/Harmonize_Tampa_Detailed.ipynb","demos/Harmonize_Tampa_Simple.ipynb"]'
diff --git a/demos/Harmonize_CapeCod_Detailed.ipynb b/demos/Harmonize_CapeCod_Detailed.ipynb
diff --git a/demos/Harmonize_CapeCod_Simple.ipynb b/demos/Harmonize_CapeCod_Simple.ipynb
diff --git a/demos/Harmonize_Pensacola_Detailed.ipynb b/demos/Harmonize_Pensacola_Detailed.ipynb
diff --git a/demos/Harmonize_Pensacola_Simple.ipynb b/demos/Harmonize_Pensacola_Simple.ipynb
diff --git a/demos/Harmonize_Tampa_Detailed.ipynb b/demos/Harmonize_Tampa_Detailed.ipynb
diff --git a/demos/Harmonize_Tampa_Simple.ipynb b/demos/Harmonize_Tampa_Simple.ipynb