Fix minor change/typo in docs #13
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name: R-test | |
on: | |
push: | |
branches: | |
[main, new_release_0-3-8] | |
pull_request: | |
branches: | |
[main] | |
schedule: | |
- cron: '11 1 1 * *' | |
# Allows you to run this workflow manually from the Actions tab | |
workflow_dispatch: | |
jobs: | |
R-test: | |
name: python ${{ matrix.python-version }}, ${{ matrix.os }} | |
runs-on: ${{ matrix.os }} | |
env: | |
REPO_NAME: ${{ github.event.repository.name }} | |
strategy: | |
matrix: | |
os: [ubuntu-latest, macos-latest] | |
python-version: ['3.8', '3.9', '3.10', '3.11'] | |
include: | |
- os: windows-latest | |
python-version: "3.9" | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Set up R | |
uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: 'release' | |
- uses: r-lib/actions/setup-pandoc@v2 | |
- name: Update pip and install testing pkgs | |
run: | | |
python -VV | |
python -m pip install --upgrade pip | |
pip install pytest | |
# fiona doesn't have wheels for windows | |
- if: matrix.os == 'windows-latest' | |
run: | | |
pip install https://github.com/cgohlke/geospatial-wheels/releases/download/v2023.7.16/GDAL-3.7.1-cp39-cp39-win_amd64.whl | |
pip install https://github.com/cgohlke/geospatial-wheels/releases/download/v2023.7.16/Fiona-1.9.4.post1-cp39-cp39-win_amd64.whl | |
- name: Install package and dependencies | |
run: | | |
python -m pip install --no-deps . | |
pip install -r requirements.txt | |
- name: Run pip env using R reticulate | |
run: | | |
install.packages("reticulate") | |
reticulate::import("harmonize_wq") | |
shell: Rscript {0} | |
- name: Run pytest | |
run: pytest -v harmonize_wq |