Fix Navigation Bar

* Fix navigation menu for gra2pes * Minor edits in the notebooks for NIST * Make landing pages for data usage and data flow diagram consistent --------- Co-authored-by: Paridhi Parajuli <[email protected]>
US-GHG-Center · Sep 19, 2024 · ae37d4d · ae37d4d
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diff --git a/_quarto.yml b/_quarto.yml
@@ -58,6 +58,7 @@ website:
               - user_data_notebooks/tm54dvar-ch4flux-monthgrid-v1_User_Notebook.ipynb
               - user_data_notebooks/epa-ch4emission-grid-v2express_User_Notebook.ipynb
               - user_data_notebooks/vulcan-ffco2-yeargrid-v4_User_Notebook.ipynb
+              - user_data_notebooks/gra2pes-ghg-monthgrid-v1_User_Notebook.ipynb
           - section: Natural Greenhouse Gas Sources Emissions and Sinks
             contents:
               - user_data_notebooks/eccodarwin-co2flux-monthgrid-v5_User_Notebook.ipynb
@@ -66,7 +67,6 @@ website:
               - user_data_notebooks/oco2-mip-co2budget-yeargrid-v1_User_Notebook.ipynb
               - user_data_notebooks/tm54dvar-ch4flux-monthgrid-v1_User_Notebook.ipynb
               - user_data_notebooks/lpjeosim-wetlandch4-grid-v2_User_Notebook.ipynb
-              - user_data_notebooks/gra2pes-ghg-monthgrid-v1_User_Notebook.ipynb
           - section: Large Emissions Events
             contents:
               - user_data_notebooks/emit-ch4plume-v1_User_Notebook.ipynb
@@ -89,14 +89,14 @@ website:
               - cog_transformation/odiac-ffco2-monthgrid-v2023.ipynb
               - cog_transformation/tm54dvar-ch4flux-monthgrid-v1.ipynb
               - cog_transformation/epa-ch4emission-grid-v2express.ipynb   
-              - cog_transformation/vulcan-ffco2-yeargrid-v4.ipynb  
+              - cog_transformation/vulcan-ffco2-yeargrid-v4.ipynb
+              - cog_transformation/gra2pes-ghg-monthgrid-v1.ipynb
           - section: Natural Greenhouse Gas Sources Emissions and Sinks
             contents:
               - cog_transformation/eccodarwin-co2flux-monthgrid-v5.ipynb
               - cog_transformation/gosat-based-ch4budget-yeargrid-v1.ipynb
               - cog_transformation/oco2-mip-co2budget-yeargrid-v1.ipynb
               - cog_transformation/tm54dvar-ch4flux-monthgrid-v1.ipynb
-              - cog_transformation/gra2pes-ghg-monthgrid-v1.ipynb
           - section: Large Emissions Events
             contents:
               - cog_transformation/emit-ch4plume-v1.ipynb
@@ -121,6 +121,7 @@ website:
               - processing_and_verification_reports/tm54dvar-ch4flux-monthgrid-v1_Processing and Verification Report.qmd
               - processing_and_verification_reports/epa-ch4emission-grid-v2express_Processing and Verification Report.qmd 
               - processing_and_verification_reports/vulcan-ffco2-yeargrid-v4_Processing and Verification Report.qmd  
+              - processing_and_verification_reports/gra2pes-ghg-monthgrid-v1_Processing and Verification Report.qmd
           - section: Natural Greenhouse Gas Sources Emissions and Sinks
             contents:
               - processing_and_verification_reports/eccodarwin-co2flux-monthgrid-v5_Processing and Verification Report.qmd
@@ -129,7 +130,6 @@ website:
               - processing_and_verification_reports/oco2-mip-co2budget-yeargrid-v1_Processing and Verification Report.qmd
               - processing_and_verification_reports/tm54dvar-ch4flux-monthgrid-v1_Processing and Verification Report.qmd
               - processing_and_verification_reports/lpjeosim-wetlandch4-grid-v2_Processing and Verification Report.qmd
-              - processing_and_verification_reports/gra2pes-ghg-monthgrid-v1_Processing and Verification Report.qmd
           - section: Large Emissions Events
             contents:
               - processing_and_verification_reports/emit-ch4plume-v1_Processing and Verification Report.qmd
@@ -153,7 +153,8 @@ website:
               - data_workflow/odiac-ffco2-monthgrid-v2023_Data_Flow.qmd
               - data_workflow/tm54dvar-ch4flux-monthgrid-v1_Data_Flow.qmd
               - data_workflow/epa-ch4emission-grid-v2express_Data_Flow.qmd
-              - data_workflow/vulcan-ffco2-yeargrid-v4_Data_Flow.qmd   
+              - data_workflow/vulcan-ffco2-yeargrid-v4_Data_Flow.qmd  
+              - data_workflow/gra2pes-ghg-monthgrid-v1_Data_Flow.qmd 
           - section: Natural Greenhouse Gas Sources Emissions and Sinks
             contents:
               - data_workflow/eccodarwin-co2flux-monthgrid-v5_Data_Flow.qmd
@@ -162,7 +163,6 @@ website:
               - data_workflow/oco2-mip-co2budget-yeargrid-v1_Data_Flow.qmd
               - data_workflow/tm54dvar-ch4flux-monthgrid-v1_Data_Flow.qmd
               - data_workflow/lpjeosim-wetlandch4-grid-v2_Data_Flow.qmd
-              - data_workflow/gra2pes-ghg-monthgrid-v1_Data_Flow.qmd
           - section: Large Emissions Events
             contents:
               - data_workflow/emit-ch4plume-v1_Data_Flow.qmd

diff --git a/cog_transformation/influx-testbed-ghg-concentrations.ipynb b/cog_transformation/influx-testbed-ghg-concentrations.ipynb
@@ -13,7 +13,7 @@
     "title: Carbon Dioxide and Methane Concentrations from the Indianapolis Flux Experiment (INFLUX)\n",
     "description: Documentation of data transformation \n",
     "author: Paridhi Parajuli \n",
-    "date: August 28, 2023\n",
+    "date: September 19, 2024\n",
     "execute:\n",
     "  freeze: true\n",
     "---"

diff --git a/cog_transformation/lam-testbed-ghg-concentrations.ipynb b/cog_transformation/lam-testbed-ghg-concentrations.ipynb
@@ -13,7 +13,7 @@
     "title: Carbon Dioxide and Methane Concentrations from the Los Angeles Megacity Carbon Project\n",
     "description: Documentation of data transformation \n",
     "author: Paridhi Parajuli \n",
-    "date: August 28, 2023\n",
+    "date: September 19, 2024\n",
     "execute:\n",
     "  freeze: true\n",
     "---"
@@ -24,7 +24,7 @@
    "id": "e1fc9d19-8d59-4cc4-a858-ba9d65ab324e",
    "metadata": {},
    "source": [
-    "This script was used to transform the NIST INFLUX  dataset into meaningful csv files for ingestion to vector dataset."
+    "This script was used to transform the the Los Angeles Megacity Carbon Project dataset into meaningful csv files for ingestion to vector dataset."
    ]
   },
   {

diff --git a/cog_transformation/nec-testbed-ghg-concentrations.ipynb b/cog_transformation/nec-testbed-ghg-concentrations.ipynb
@@ -13,7 +13,7 @@
     "title: Carbon Dioxide and Methane Concentrations from the Northeast Corridor (NEC) Urban Test Bed\n",
     "description: Documentation of data transformation \n",
     "author: Paridhi Parajuli \n",
-    "date: August 28, 2023\n",
+    "date: September 19, 2024\n",
     "execute:\n",
     "  freeze: true\n",
     "---"
@@ -24,7 +24,7 @@
    "id": "e79030fa-6cb0-4612-b5f0-23d42c642b74",
    "metadata": {},
    "source": [
-    "This script was used to transform the NIST INFLUX  dataset into meaningful csv files for ingestion to vector dataset."
+    "This script was used to transform the  Northeast Corridor (NEC) Urban Test Bed  dataset into meaningful csv files for ingestion to vector dataset."
    ]
   },
   {

diff --git a/datatransformationcode.qmd b/datatransformationcode.qmd
@@ -20,13 +20,14 @@ Explore, analyze, and make a difference with the US GHG Center.
 3. [TM5-4DVar Isotopic CH₄ Inverse Fluxes](cog_transformation/tm54dvar-ch4flux-monthgrid-v1.ipynb)
 4. [U.S. Gridded Anthropogenic Methane Emissions Inventory](cog_transformation/epa-ch4emission-grid-v2express.ipynb)
 5. [Vulcan Fossil Fuel CO₂ Emissions](cog_transformation/vulcan-ffco2-yeargrid-v4.ipynb)
+6. [GRA²PES Greenhouse Gas and Air Quality Species](cog_transformation/gra2pes-ghg-monthgrid-v1.ipynb)
 
 ## Natural Greenhouse Gas Emissions and Sinks
 1. [Air-Sea CO₂ Flux, ECCO-Darwin Model v5](cog_transformation/eccodarwin-co2flux-monthgrid-v5.ipynb)
 2. [GOSAT-based Top-down Total and Natural Methane Emissions](cog_transformation/gosat-based-ch4budget-yeargrid-v1.ipynb)
 3. [OCO-2 MIP Top-Down CO₂ Budgets](cog_transformation/oco2-mip-co2budget-yeargrid-v1.ipynb)
 4. [TM5-4DVar Isotopic CH₄ Inverse Fluxes](cog_transformation/tm54dvar-ch4flux-monthgrid-v1.ipynb)
-5. [GRA²PES Greenhouse Gas and Air Quality Species](cog_transformation/gra2pes-ghg-monthgrid-v1.ipynb)
+
 
 ## Large Emissions Events
 1. [EMIT Methane Point Source Plume Complexes](cog_transformation/emit-ch4plume-v1.ipynb)

diff --git a/datausage.qmd b/datausage.qmd
@@ -22,6 +22,8 @@ Explore, analyze, and make a difference with the US GHG Center.
    - [Beginner level notebook](user_data_notebooks/epa-ch4emission-grid-v2express_User_Notebook.ipynb) to access, visualize, explore statistics, and create a time series of the U.S. Gridded Anthropogenic Methane Emissions Inventory dataset.
 5. Vulcan Fossil Fuel CO₂ Emissions
    - [Beginner level notebook](user_data_notebooks/vulcan-ffco2-yeargrid-v4_User_Notebook.ipynb) to access, visualize, explore statistics, and create a time series of the Vulcan Fossil Fuel CO₂ Emissions, Version 4 dataset.
+6. GRA²PES Greenhouse Gas and Air Quality Species
+   - [Beginner level notebook](user_data_notebooks/gra2pes-ghg-monthgrid-v1_User_Notebook.ipynb.ipynb) to access, visualize, explore statistics, and create a time series of the GRA2PES, Version 1 dataset.
 
 ## Natural Greenhouse Gas Emissions and Sinks
 1. Air-Sea CO₂ Flux, ECCO-Darwin Model v5 
@@ -37,8 +39,6 @@ Explore, analyze, and make a difference with the US GHG Center.
    - [Beginner level notebook](user_data_notebooks/tm54dvar-ch4flux-monthgrid-v1_User_Notebook.ipynb) to access, visualize, explore statistics, and create a time series of the TM5-4DVar Isotopic CH₄ Inverse Fluxes dataset.
 6. Wetland Methane Emissions, LPJ-EOSIM model
    - [Beginner level notebook](user_data_notebooks/lpjeosim-wetlandch4-grid-v2_User_Notebook.ipynb) to access, visualize, explore statistics, and create a time series of the Wetland Methane Emissions, LPJ-EOSIM model dataset.
-7. GRA²PES Greenhouse Gas and Air Quality Species
-   - [Beginner level notebook](user_data_notebooks/gra2pes-ghg-monthgrid-v1_User_Notebook.ipynb.ipynb) to access, visualize, explore statistics, and create a time series of the GRA2PES, Version 1 dataset.
 
 ## Large Emissions Events
 1. EMIT Methane Point Source Plume Complexes
@@ -49,9 +49,12 @@ Explore, analyze, and make a difference with the US GHG Center.
    - [Beginner level notebook](user_data_notebooks/noaa-insitu_User_Notebook.ipynb) to access, visualize, explore statistics, and create a time series of the Atmospheric Carbon Dioxide Concentrations from NOAA Global Monitoring Laboratory dataset.
 2. OCO-2 GEOS Column CO₂ Concentrations
    - [Beginner level notebook](user_data_notebooks/oco2geos-co2-daygrid-v10r_User_Notebook.ipynb) to access, visualize, explore statistics, and create a time series of the OCO-2 GEOS Column CO₂ Concentrations dataset.
-3. [Carbon Dioxide and Methane Concentrations from the Indianapolis Flux Experiment (INFLUX)](user_data_notebooks/influx-testbed-ghg-concentrations_User_Notebook)
-4. [Carbon Dioxide and Methane Concentrations from the Los Angeles Megacity Carbon Project](user_data_notebooks/lam-testbed-ghg-concentrations_User_Notebook)
-5. [Carbon Dioxide and Methane Concentrations from the Northeast Corridor (NEC) Urban Test Bed](user_data_notebooks/nec-testbed-ghg-concentrations_User_Notebook)
+3. Carbon Dioxide and Methane Concentrations from the Indianapolis Flux Experiment (INFLUX)
+   - [Beginner level notebook](user_data_notebooks/influx-testbed-ghg-concentrations_User_Notebook)
+4. Carbon Dioxide and Methane Concentrations from the Los Angeles Megacity Carbon Project
+   - [Beginner level notebook](user_data_notebooks/lam-testbed-ghg-concentrations_User_Notebook)
+5. Carbon Dioxide and Methane Concentrations from the Northeast Corridor (NEC) Urban Test Bed
+   - [Beginner level notebook](user_data_notebooks/nec-testbed-ghg-concentrations_User_Notebook)
 
 ## Socioeconomic
 1. SEDAC Gridded World Population Density

diff --git a/processingreport.qmd b/processingreport.qmd
@@ -19,6 +19,7 @@ Explore, analyze, and make a difference with the US GHG Center.
 3. [TM5-4DVar Isotopic CH₄ Inverse Fluxes Processing and Verification Report](processing_and_verification_reports/tm54dvar-ch4flux-monthgrid-v1_Processing and Verification Report.qmd)
 4. [U.S. Gridded Anthropogenic Methane Emissions Inventory Processing and Verification Report](processing_and_verification_reports/epa-ch4emission-grid-v2express_Processing and Verification Report.qmd)
 5. [Vulcan Fossil Fuel CO₂ Emissions Processing and Verification Report](processing_and_verification_reports/vulcan-ffco2-yeargrid-v4_Processing and Verification Report.qmd)
+6. [GRA²PES Greenhouse Gas and Air Quality Species Processing and Verification Report](processing_and_verification_reports/gra2pes-ghg-monthgrid-v1_Processing and Verification Report.qmd)
 
 ## Natural Greenhouse Gas Emissions and Sinks
 1. [Air-Sea CO₂ Flux, ECCO-Darwin Model v5 Processing and Verification Report](processing_and_verification_reports/eccodarwin-co2flux-monthgrid-v5_Processing and Verification Report.qmd)
@@ -27,7 +28,6 @@ Explore, analyze, and make a difference with the US GHG Center.
 4. [OCO-2 MIP Top-Down CO₂ Budgets Processing and Verification Report](processing_and_verification_reports/oco2-mip-co2budget-yeargrid-v1_Processing and Verification Report.qmd)
 5. [TM5-4DVar Isotopic CH₄ Inverse Fluxes Processing and Verification Report](processing_and_verification_reports/tm54dvar-ch4flux-monthgrid-v1_Processing and Verification Report.qmd)
 6. [Wetland Methane Emissions, LPJ-EOSIM model Processing and Verification Report](processing_and_verification_reports/lpjeosim-wetlandch4-grid-v2_Processing and Verification Report.qmd)
-7. [GRA²PES Greenhouse Gas and Air Quality Species Processing and Verification Report](processing_and_verification_reports/gra2pes-ghg-monthgrid-v1_Processing and Verification Report.qmd)
 
 ## Large Emissions Events
 1. [EMIT Methane Point Source Plume Complexes Processing and Verification Report](processing_and_verification_reports/emit-ch4plume-v1_Processing and Verification Report.qmd)
@@ -36,9 +36,9 @@ Explore, analyze, and make a difference with the US GHG Center.
 1. [Atmospheric Carbon Dioxide Concentrations from NOAA Global Monitoring Laboratory Processing and Verification Report](processing_and_verification_reports/noaa-gggrn-co2-concentrations_Processing and Verification Report.qmd)
 2. [Atmospheric Methane Concentrations from NOAA Global Monitoring Laboratory Processing and Verification Report](processing_and_verification_reports/noaa-gggrn-ch4-concentrations_Processing and Verification Report.qmd)
 3. [OCO-2 GEOS Column CO₂ Concentrations Processing and Verification Report](processing_and_verification_reports/oco2geos-co2-daygrid-v10r_Processing and Verification Report.qmd)
-3. [Carbon Dioxide and Methane Concentrations from the Indianapolis Flux Experiment (INFLUX)](processing_and_verification_reports/influx-testbed-ghg-concentrations_Processing and Verification Report.qmd)
-4. [Carbon Dioxide and Methane Concentrations from the Los Angeles Megacity Carbon Project](processing_and_verification_reports/lam-testbed-ghg-concentrations_Processing and Verification Report.qmd)
-5. [Carbon Dioxide and Methane Concentrations from the Northeast Corridor (NEC) Urban Test Bed](processing_and_verification_reports/nec-testbed-ghg-concentrations_Processing and Verification Report.qmd)
+3. [Carbon Dioxide and Methane Concentrations from the Indianapolis Flux Experiment (INFLUX) Processing and Verification Report](processing_and_verification_reports/influx-testbed-ghg-concentrations_Processing and Verification Report.qmd)
+4. [Carbon Dioxide and Methane Concentrations from the Los Angeles Megacity Carbon Project Processing and Verification Report](processing_and_verification_reports/lam-testbed-ghg-concentrations_Processing and Verification Report.qmd)
+5. [Carbon Dioxide and Methane Concentrations from the Northeast Corridor (NEC) Urban Test Bed Processing and Verification Report](processing_and_verification_reports/nec-testbed-ghg-concentrations_Processing and Verification Report.qmd)
 
 ## Socioeconomic
 1. [SEDAC Gridded World Population Density Processing and Verification Report](processing_and_verification_reports/sedac-popdensity-yeargrid5yr-v4.11_Processing and Verification Report.qmd)

diff --git a/user_data_notebooks/influx-testbed-ghg-concentrations_User_Notebook.ipynb b/user_data_notebooks/influx-testbed-ghg-concentrations_User_Notebook.ipynb
@@ -8,7 +8,7 @@
     "title: Carbon Dioxide and Methane Concentrations from the Indianapolis Flux Experiment (INFLUX) \n",
     "description: Atmospheric concentrations of carbon dioxide (CO₂) and methane (CH₄) collected at Indianapolis Flux Experiment (INFLUX) tower sites\n",
     "author: Siddharth Chaudhary, Paridhi Parajuli\n",
-    "date: 12 September 2024\n",
+    "date: September 19, 2024\n",
     "execute:\n",
     "   freeze: true\n",
     "---"
@@ -32,9 +32,9 @@
    "source": [
     "## About the Data\n",
     "\n",
-    "NIST is engaged in research to improve measurement of greenhouse gas emissions in areas containing multiple emission sources and sinks, such as site01ies. NIST's objective is to develop measurement tools supporting independent means to increase the accuracy of greenhouse gas emissions data at urban and regional geospatial scales. NIST has established three test beds in U.S. site01ies to develop and evaluate the performance of advanced measurement capabilities for emissions independent of their origin. Located in Indianapolis, Indiana, the Los Angeles air basin of California, and the U.S. Northeast corridor (beginning with the Baltimore/Washington D.C. region), the test beds have been selected for their varying meteorology, terrain and emissions characteristics. These test beds will serve as a means to independently diagnose the accuracy of emissions data obtained directly from emission or uptake sources.\n",
+    "NIST is engaged in research to improve measurement of greenhouse gas emissions in areas containing multiple emission sources and sinks, such as cities. NIST's objective is to develop measurement tools supporting independent means to increase the accuracy of greenhouse gas emissions data at urban and regional geospatial scales. NIST has established three test beds in U.S. cities to develop and evaluate the performance of advanced measurement capabilities for emissions independent of their origin. Located in Indianapolis, Indiana, the Los Angeles air basin of California, and the U.S. Northeast corridor (beginning with the Baltimore/Washington D.C. region), the test beds have been selected for their varying meteorology, terrain and emissions characteristics. These test beds will serve as a means to independently diagnose the accuracy of emissions data obtained directly from emission or uptake sources.\n",
     "\n",
-    "For more information regarding this dataset, please visit the [Carbon Dioxide and Methane Concentrations from the Northeast Corridor (NEC) Urban Test Bed](https://earth.gov/ghgcenter/data-catalog/nec-testbed-ghg-concentrations) data overview page."
+    "For more information regarding this dataset, please visit the [Carbon Dioxide and Methane Concentrations from the Indianapolis Flux Experiment (INFLUX)](https://earth.gov/ghgcenter/data-catalog/influx-testbed-ghg-concentrations) data overview page."
    ]
   },
   {