flye instead of raven

UPHL-BioNGS · Mar 5, 2024 · c0442f1 · c0442f1
1 parent cbcbd8e
commit c0442f1
Show file tree

Hide file tree

Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/.github/workflows/test_sample_sheet_all.yml b/.github/workflows/test_sample_sheet_all.yml
@@ -26,7 +26,7 @@ jobs:
         run: |
           docker --version
           
-          nextflow run . -profile docker -c .github/workflows/github_actions.config --sample_sheet .github/workflows/sample_sheet_all.csv  --assembler raven
+          nextflow run . -profile docker -c .github/workflows/github_actions.config --sample_sheet .github/workflows/sample_sheet_all.csv
 
           tree donut_falls
 

diff --git a/.github/workflows/test_sample_sheet_both_only.yml b/.github/workflows/test_sample_sheet_both_only.yml
@@ -26,7 +26,7 @@ jobs:
         run: |
           docker --version
           
-          nextflow run . -profile docker -c .github/workflows/github_actions.config --sample_sheet .github/workflows/sample_sheet_both.csv  --assembler raven
+          nextflow run . -profile docker -c .github/workflows/github_actions.config --sample_sheet .github/workflows/sample_sheet_both.csv
 
           tree donut_falls
 

diff --git a/.github/workflows/test_sample_sheet_lr_only.yml b/.github/workflows/test_sample_sheet_lr_only.yml
@@ -26,7 +26,7 @@ jobs:
         run: |
           docker --version
           
-          nextflow run . -profile docker -c .github/workflows/github_actions.config --sample_sheet .github/workflows/sample_sheet_lr.csv  --assembler raven
+          nextflow run . -profile docker -c .github/workflows/github_actions.config --sample_sheet .github/workflows/sample_sheet_lr.csv
 
           tree donut_falls