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Summarize Pipeline Function #26

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Summarize Pipeline Function #26

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Adds summarize_pipeline function.

> summarize_pipeline(gpa)

Summary of GLM Pipeline Analysis: 

Analysis Name:  gpa_tests
  Node Name:  longleaf-login5.its.unc.edu
  Finalize Complete:  FALSE
--------
 Settings: 
 -  Scheduler Name:  slurm 
 -  TR:  1 
 -  Multi-Level Run:  FALSE 
 -  GLM Settings:  default 
 -  Exclude Runs:  max(FD) > 5 | sum(FD > .9)/length(FD) > .10 
 -  Exclude Subjects:  n_good_runs < 4 
 -  Truncate Run:  (FD > 0.9 & time > last_offset) | (time > last_offset + last_isi) 
--------
 Key Columns: 
   id, session, trial, run_trial, mr_dir, run_nifti, run_number, exclude_subject 
n Expected Runs:  8 
--------
 Models: 
 -  L1 Models: NA
 -  L2 Models: NA
 -  L3 Models: NA
--------
 Computation Info: 
 FSL Level 1:
  -  Feat Time:  
  -  Feat Memory (GB):  
 FSL Level 2:
  -  Feat Time:  
  -  Feat Memory (GB):  
 FSL Level 3:
  -  Feat Time:  
  -  Feat Memory (GB):  
--------
 System Info: 
 -  Output Directory:  /work/appscr/r/willasc/RtmpLDU62L/gpa_tests 
 -  System Name:  Linux 
 -  Release:  4.18.0-477.15.1.el8_8.x86_64 
 -  Version:  #1 SMP Fri Jun 2 08:27:19 EDT 2023 
 -  Node Name:  longleaf-login5.its.unc.edu 
 -  Machine:  x86_64 
 -  Login:  willasc 
 -  User:  willasc 
 -  Effective User:  willasc

@wasciutto wasciutto marked this pull request as draft October 3, 2023 13:16
mock object framework.
to df functions and rename
the id of subject_df.
data to create csv files for test
ingestion. The builder functions remain
for modifying the committed csv
files if needed.
builder function that creates a cache
RDS file. Ignore the RDS file.
base gpa. Intended for manual use to
rebuild models.
saving for now.
L2 & L3 models.
run in context of testthat folder when
using the library's commands.
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