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Merge pull request #88 from UBC-MDS/update-make-usage
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typo fixed in README
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monazhu authored Dec 7, 2023
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Expand Up @@ -34,7 +34,7 @@ A containerized version of the analysis has been published to Dockerhub as a [Do

5. To run the analysis and to create the corresponding output report, navigate to the `Terminal` tab (if you are unable to locate it, go to `Tools` bar at the top, navigate to `Terminal`, and select `New Terminal`) on Rstudio Server and run `make all`, which will (1) run all of the analyses and save their outputs and (2) generate a `html` report summarizing the analyses. The output analysis report (`analysis_report.html`) is located in the output folder.

6. To remove all the files and folder created with `make all`, run `make clear` in the terminal.
6. To remove all the files and folder created with `make all`, run `make clean` in the terminal.

**Note1:** VERY IMPORTANT: the containerizaiton solution is self-contained for running analysis and rendering reports, please do not try to activate the `renv` environment when you are using the containerized solution, which can overlay the plain container environment and lead to unexpected errors.

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