adding Dockerization modules

.github/workflows/docker-publish.yml

@@ -0,0 +1,49 @@
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+
+# GitHub recommends pinning actions to a commit SHA.
+# To get a newer version, you will need to update the SHA.
+# You can also reference a tag or branch, but the action may change without warning.
+
+name: Publish Docker image
+
+on: 
+  push: 
+    branches:
+      - main
+      - Dockerization
+    paths: 
+      - 'Dockerfile'
+
+jobs:
+  push_to_registry:
+    name: Push Docker image to Docker Hub
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check out the repo
+        uses: actions/checkout@v4
+
+      - name: Log in to Docker Hub
+        uses: docker/login-action@f4ef78c080cd8ba55a85445d5b36e214a81df20a
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_PASSWORD }}
+
+      - name: Extract metadata (tags, labels) for Docker
+        id: meta
+        uses: docker/metadata-action@9ec57ed1fcdbf14dcef7dfbe97b2010124a938b7
+        with:
+          images: wenyunie/dsci522-rocker-speed-dating
+          tags: |
+            type=raw, value=milestone2
+      
+      - name: Build and push Docker image
+        uses: docker/build-push-action@3b5e8027fcad23fda98b2e3ac259d8d67585f671
+        with:
+          context: .
+          file: ./Dockerfile
+          push: true
+          tags: ${{ steps.meta.outputs.tags }}
+          labels: ${{ steps.meta.outputs.labels }}

.gitignore

@@ -166,3 +166,6 @@ cython_debug/
 .Rproj.user
 .RData
 .RHistory
+.config/
+.local/
+.sh_history

Dockerfile

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+FROM rocker/tidyverse:4.3.2
+
+RUN Rscript -e "remotes::install_version('here', '1.0.1')" &&\
+    Rscript -e "remotes::install_version('markdown', '1.11')"

docker-compose.yml

@@ -0,0 +1,9 @@
+services:
+  analysis-env:
+    image: wenyunie/dsci522-rocker-speed-dating:milestone2  # This is going to be replaced by our customized computational environment image
+    ports:
+      - "8787:8787"
+    volumes:
+      - .:/home/rstudio
+    environment:
+      PASSWORD: key_to_dating