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# Copyright (c) UBC-DSCI Development Team. | ||
# Distributed under the terms of the Modified BSD License. | ||
ARG BASE_CONTAINER=jupyter/r-notebook | ||
FROM $BASE_CONTAINER | ||
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LABEL maintainer="Tiffany Timbers <[email protected]>" | ||
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# Install R packages on conda-forge | ||
RUN conda install --quiet --yes -c conda-forge \ | ||
r-cowplot=1.* \ | ||
r-ggally=1.5.* \ | ||
r-gridextra=2.3.* \ | ||
r-infer=0.5.* \ | ||
r-testthat=2.3.* \ | ||
r-rpostgres=1.2.* | ||
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# Install jupyter extensions (nbgitpuller, git, jupytext) | ||
USER root | ||
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RUN pip install git+https://github.com/data-8/nbgitpuller \ | ||
&& jupyter serverextension enable --sys-prefix nbgitpuller \ | ||
&& jupyter labextension install @jupyterlab/git \ | ||
&& pip install jupyterlab-git \ | ||
&& jupyter serverextension enable --py jupyterlab_git \ | ||
&& pip install jupytext --upgrade \ | ||
&& jupyter lab build | ||
RUN useradd -m -s /bin/bash -N -u 9999 jupyter | ||
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USER jupyter | ||
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# Configure jupyter user | ||
ENV NB_USER=jupyter \ | ||
NB_UID=9999 | ||
ENV HOME=/home/$NB_USER | ||
WORKDIR $HOME |