added viz

TuftsBCB · Mar 27, 2024 · ea4847b · ea4847b
1 parent d6f42b2
commit ea4847b
Show file tree

Hide file tree

Showing 13 changed files with 3,573 additions and 1 deletion.
diff --git a/.gitignore b/.gitignore
@@ -6,4 +6,6 @@ __pycache__/
 .ipynb_checkpoints
 lib
 view.html
+test.html
+Untitled.ipynb
 demo_mESC_grn.hdf5
diff --git a/docs/_static/rd_hammond_Cx3cr1.html b/docs/_static/rd_hammond_Cx3cr1.html
diff --git a/docs/_static/rd_hammond_Fcrls.html b/docs/_static/rd_hammond_Fcrls.html
diff --git a/docs/_static/rd_hammond_Hexb.html b/docs/_static/rd_hammond_Hexb.html
diff --git a/docs/_static/rd_hammond_Mertk.html b/docs/_static/rd_hammond_Mertk.html
diff --git a/docs/_static/rd_hammond_P2ry12.html b/docs/_static/rd_hammond_P2ry12.html
diff --git a/docs/_static/rd_hammond_Pros1.html b/docs/_static/rd_hammond_Pros1.html
diff --git a/docs/_static/rd_hammond_Sall1.html b/docs/_static/rd_hammond_Sall1.html
diff --git a/docs/_static/rd_hammond_Siglech.html b/docs/_static/rd_hammond_Siglech.html
diff --git a/docs/_static/rd_hammond_Tmem119.html b/docs/_static/rd_hammond_Tmem119.html
diff --git a/docs/_static/rd_hammond_Trem2.html b/docs/_static/rd_hammond_Trem2.html
diff --git a/regdiffusion/models/regdiffusion.py b/regdiffusion/models/regdiffusion.py
@@ -134,7 +134,7 @@ def soft_thresholding(self, x, tau):
     def I_minus_A(self):
         mask = self.mask_nonparam
         if self.train:
-            A_dropout = (torch.rand_like(self.adj_A)>self.adj_dropout)
+            A_dropout = (torch.rand_like(self.adj_A)>self.adj_dropout).float()
             A_dropout /= (1-self.adj_dropout)
             mask = mask * A_dropout
         clean_A = self.soft_thresholding(self.adj_A, self.gene_reg_norm/2)*mask

diff --git a/resources/.DS_Store b/resources/.DS_Store